dupRadar: a Bioconductor package for the assessment of PCR artifacts in RNA-Seq data. (Q31138311)

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26 March 2020

title

dupRadar: a Bioconductor package for the assessment of PCR artifacts in RNA-Seq data (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27769170 AND SRC:MED&resulttype=core&format=json

26 March 2020

0 references

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3

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26 March 2020

author name string

Sergi Sayols

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27769170 AND SRC:MED&resulttype=core&format=json

26 March 2020

Denise Scherzinger

series ordinal

2

1 reference

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26 March 2020

publication date

21 October 2016

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27769170 AND SRC:MED&resulttype=core&format=json

26 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27769170 AND SRC:MED&resulttype=core&format=json

26 March 2020

volume

17

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26 March 2020

issue

1

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26 March 2020

page(s)

428

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27769170 AND SRC:MED&resulttype=core&format=json

describes a project that uses

26 March 2020

edgeR

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud

1 reference

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A comprehensive evaluation of ensembl, RefSeq, and UCSC annotations in the context of RNA-seq read mapping and gene quantification

21 June 2018

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limma powers differential expression analyses for RNA-sequencing and microarray studies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073875

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073875

RNA-seq Data: Challenges in and Recommendations for Experimental Design and Analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073875

RNA-Seq transcriptome profiling identifies CRISPLD2 as a glucocorticoid responsive gene that modulates cytokine function in airway smooth muscle cells

21 June 2018

1 reference

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Library preparation methods for next-generation sequencing: tone down the bias

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073875

Quantitative single-cell RNA-seq with unique molecular identifiers

21 June 2018

1 reference

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From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073875

Systematic evaluation of spliced alignment programs for RNA-seq data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073875

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073875

Streaming fragment assignment for real-time analysis of sequencing experiments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073875

STAR: ultrafast universal RNA-seq aligner

21 June 2018

1 reference

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Qualimap: evaluating next-generation sequencing alignment data.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073875

RSeQC: quality control of RNA-seq experiments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073875

RNA-SeQC: RNA-seq metrics for quality control and process optimization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073875

Differential expression in RNA-seq: a matter of depth

21 June 2018

1 reference

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Quality control and preprocessing of metagenomic datasets

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073875

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

21 June 2018

1 reference

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biobambam: tools for read pair collation based algorithms on BAM files

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186/S12859-016-1276-2

Quality control of RNA-seq experiments

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073875

10.1186/S12859-016-1276-2

25 November 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27769170 AND SRC:MED&resulttype=core&format=json

journals/bmcbi/SayolsSK16

26 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27769170 AND SRC:MED&resulttype=core&format=json

26 March 2020

PubMed publication ID

27769170

1 reference