ITD assembler: an algorithm for internal tandem duplication discovery from short-read sequencing data (Q31086279)

16 August 2017

ITD assembler: an algorithm for internal tandem duplication discovery from short-read sequencing data (English)

1 reference

16 August 2017

7

Marek Kimmel

1 reference

16 August 2017

5

Richard A Gibbs

1 reference

16 August 2017

Navin Rustagi

1

1 reference

16 August 2017

Oliver A Hampton

2

1 reference

16 August 2017

Jie Li

3

1 reference

16 August 2017

Liu Xi

4

1 reference

16 August 2017

Sharon E Plon

6

1 reference

16 August 2017

David A Wheeler

8

1 reference

16 August 2017

27 April 2016

1 reference

16 August 2017

1 reference

16 August 2017

17

1 reference

16 August 2017

188

1 reference

FermiKit: assembly-based variant calling for Illumina resequencing data

16 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847212

Methods for the detection and assembly of novel sequence in high-throughput sequencing data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847212

Genomon ITDetector: a tool for somatic internal tandem duplication detection from cancer genome sequencing data.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847212

MindTheGap: integrated detection and assembly of short and long insertions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847212

CD34⁺/CD38⁻ acute myelogenous leukemia cells aberrantly express Aurora kinase A.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847212

Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847212

Detection of FLT3 internal tandem duplication in targeted, short-read-length, next-generation sequencing data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847212

Limitations of next-generation genome sequence assembly

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847212

Assembly of large genomes using second-generation sequencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847212

The Sequence Alignment/Map format and SAMtools

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847212

Fast and accurate short read alignment with Burrows-Wheeler transform

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847212

The impact of FLT3 internal tandem duplication mutant level, number, size, and interaction with NPM1 mutations in a large cohort of young adult patients with acute myeloid leukemia

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847212

Newly identified c-KIT receptor tyrosine kinase ITD in childhood AML induces ligand-independent growth and is responsive to a synergistic effect of imatinib and rapamycin

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847212

FLT3-ITD-TKD dual mutants associated with AML confer resistance to FLT3 PTK inhibitors and cytotoxic agents by overexpression of Bcl-x(L).

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847212

28 July 2018

Whole-genome disassembly

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847212

Basic local alignment search tool

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847212

Conflicting data on the prognostic significance of FLT3/TKD mutations in acute myeloid leukemia might be related to the incidence of biallelic disease

28 July 2018

1 reference

https://api.crossref.org/works/10.1186/S12859-016-1031-8

Molecular diagnostics of acute myeloid leukemia: it's a (next) generational thing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/S12859-016-1031-8

BamTools: a C API and toolkit for analyzing and managing BAM files

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/S12859-016-1031-8

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/S12859-016-1031-8

Prognostic impact, concurrent genetic mutations, and gene expression features of AML with CEBPA mutations in a cohort of 1182 cytogenetically normal AML patients: further evidence for CEBPA double mutant AML as a distinctive disease entity

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27121965

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12859-016-1031-8

1 reference

journals/bmcbi/RustagiHLXGPKW16

16 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

16 August 2017

PubMed publication ID

27121965

1 reference