JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow. (Q31079859)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17123449 AND SRC:MED&resulttype=core&format=json

22 December 2019

review article

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title

JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow (English)

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22 December 2019

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13

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22 December 2019

Lee Meisel

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22 December 2019

Herman Silva

2

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22 December 2019

Carito Guziolowski

4

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22 December 2019

Jonathan Maldonado

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22 December 2019

Reinaldo Campos-Vargas

11

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22 December 2019

Veronica Acosta‐Martinez

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object named as

Veronica Martinez

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22 December 2019

author name string

Mariano Latorre

1

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22 December 2019

Juan Saba

3

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22 December 2019

Paula Vizoso

5

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22 December 2019

Andrea Morales

8

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22 December 2019

Rodrigo Caroca

9

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22 December 2019

Veronica Cambiazo

10

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22 December 2019

Mauricio Gonzalez

12

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22 December 2019

Julio Retamales

14

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22 December 2019

publication date

23 November 2006

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22 December 2019

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22 December 2019

volume

7

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22 December 2019

page(s)

513

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17123449 AND SRC:MED&resulttype=core&format=json

Generation, annotation and analysis of ESTs from Trichoderma harzianum CECT 2413.

22 December 2019

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Gene identification and analysis of transcripts differentially regulated in fracture healing by EST sequencing in the domestic sheep

21 June 2018

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21 June 2018

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Confirming single nucleotide polymorphisms from expressed sequence tag datasets derived from three cattle cDNA libraries

21 June 2018

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Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index

21 June 2018

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Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts

21 June 2018

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21 June 2018

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A rapid and efficient method for purifying high quality total RNA from peaches (Prunus persica) for functional genomics analyses

21 June 2018

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Sequencing and analysis of common bean ESTs. Building a foundation for functional genomics

21 June 2018

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EST pipeline system: detailed and automated EST data processing and mining

21 June 2018

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ESTAP--an automated system for the analysis of EST data

21 June 2018

1 reference

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ESTIMA, a tool for EST management in a multi-project environment

21 June 2018

1 reference

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ESTminer: a Web interface for mining EST contig and cluster databases

21 June 2018

1 reference

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Mining single nucleotide polymorphisms from EST data of silkworm, Bombyx mori, inbred strain Dazao.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676024

EST-PAGE--managing and analyzing EST data.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676024

Differential representation of sunflower ESTs in enriched organ-specific cDNA libraries in a small scale sequencing project

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676024

A double-screening method to identify reliable candidate non-synonymous SNPs from chicken EST data.

21 June 2018

1 reference

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ESTAnnotator: A tool for high throughput EST annotation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676024

Systematic expression profiling of the mouse transcriptome using RIKEN cDNA microarrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676024

PipeOnline 2.0: automated EST processing and functional data sorting

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676024

Annotated expressed sequence tags and cDNA microarrays for studies of brain and behavior in the honey bee.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676024

InterProScan--an integration platform for the signature-recognition methods in InterPro

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676024

The Sequence of the Human Genome

21 June 2018

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Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

21 June 2018

1 reference

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STACK: Sequence Tag Alignment and Consensus Knowledgebase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676024

An optimized protocol for analysis of EST sequences

21 June 2018

1 reference

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The genome sequence of Drosophila melanogaster

21 June 2018

1 reference

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CAP3: A DNA sequence assembly program

21 June 2018

1 reference

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Consed: A Graphical Tool for Sequence Finishing

21 June 2018

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Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities

21 June 2018

1 reference

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Base-Calling of Automated Sequencer Traces UsingPhred. I. Accuracy Assessment

21 June 2018

1 reference

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The construction of Arabidopsis expressed sequence tag assemblies. A new resource to facilitate gene identification

21 June 2018

1 reference

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Basic local alignment search tool

21 June 2018

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Large scale cDNA sequencing for analysis of quantitative and qualitative aspects of gene expression

21 June 2018

1 reference

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EGene: a configurable pipeline generation system for automated sequence analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676024

Large-scale analysis of the barley transcriptome based on expressed sequence tags

25 November 2018

1 reference

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Heterogeneity detector: finding heterogeneous positions in Phred/Phrap assemblies

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676024

PartiGene--constructing partial genomes

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676024

ESTWeb: bioinformatics services for EST sequencing projects

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676024

25 November 2018

Identifiers

DOI

10.1186/1471-2105-7-513

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17123449 AND SRC:MED&resulttype=core&format=json

journals/bmcbi/LatorreSSGVMMMCCCGORM06

22 December 2019

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17123449 AND SRC:MED&resulttype=core&format=json

22 December 2019

PubMed publication ID

17123449

1 reference