Combining NMR relaxation with chemical shift perturbation data to drive protein-protein docking. (Q31038496)

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20 January 2020

title

Combining NMR relaxation with chemical shift perturbation data to drive protein-protein docking (English)

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20 January 2020

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3

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20 January 2020

Aalt D J van Dijk

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1

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20 January 2020

Alexandre Bonvin

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4

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20 January 2020

author name string

Robert Kaptein

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2

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20 January 2020

publication date

1 April 2006

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Journal of Biomolecular NMR

20 January 2020

published in

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volume

34

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20 January 2020

issue

4

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20 January 2020

page(s)

237-244

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The Xplor-NIH NMR molecular structure determination package

20 January 2020

cites work

1 reference

12 December 2020

Weak alignment NMR: a hawk-eyed view of biomolecular structure

1 reference

12 December 2020

The high-resolution structure of the histidine-containing phosphocarrier protein HPr from Escherichia coli determined by restrained molecular dynamics from nuclear magnetic resonance nuclear Overhauser effect data

1 reference

12 December 2020

Defining long range order in NMR structure determination from the dependence of heteronuclear relaxation times on rotational diffusion anisotropy

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12 December 2020

Domain orientation in beta-cyclodextrin-loaded maltose binding protein: diffusion anisotropy measurements confirm the results of a dipolar coupling study

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12 December 2020

Three-dimensional structure of the Escherichia coli phosphocarrier protein IIIglc

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12 December 2020

Backbone dynamics of calmodulin studied by 15N relaxation using inverse detected two-dimensional NMR spectroscopy: the central helix is flexible.

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12 December 2020

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

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12 December 2020

Direct Determination of Changes of Interdomain Orientation on Ligation: Use of the Orientational Dependence of15N NMR Relaxation in Abl SH(32)†

1 reference

12 December 2020

Mapping of the binding interfaces of the proteins of the bacterial phosphotransferase system, HPr and IIAglc

1 reference

12 December 2020

Combined use of NMR relaxation measurements and hydrodynamic calculations to study protein association. Evidence for tetramers of low molecular weight protein tyrosine phosphatase in solution

1 reference

12 December 2020

Filtering and selection of structural models: combining docking and NMR.

1 reference

12 December 2020

Efficient analysis of macromolecular rotational diffusion from heteronuclear relaxation data

1 reference

12 December 2020

Solution structure of the phosphoryl transfer complex between the signal transducing proteins HPr and IIAGlucose of the Escherichia coli phosphoenolpyruvate:sugar phosphotransferase system

1 reference

12 December 2020

Data-driven docking for the study of biomolecular complexes

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12 December 2020

Principles of docking: An overview of search algorithms and a guide to scoring functions

1 reference

12 December 2020

Long-range motional restrictions in a multidomain zinc-finger protein from anisotropic tumbling.

1 reference

12 December 2020

HYDRONMR: prediction of NMR relaxation of globular proteins from atomic-level structures and hydrodynamic calculations

1 reference

12 December 2020

Various strategies of using residual dipolar couplings in NMR-driven protein docking: application to Lys48-linked di-ubiquitin and validation against 15N-relaxation data

1 reference

12 December 2020

The relative orientation of the fibronectin 6F1(1)F2 module pair: a 15N NMR relaxation study.

1 reference

12 December 2020

Docking of protein-protein complexes on the basis of highly ambiguous intermolecular distance restraints derived from 1H/15N chemical shift mapping and backbone 15N-1H residual dipolar couplings using conjoined rigid body/torsion angle dynamics.

1 reference

12 December 2020

Identification of protein-protein interaction sites from docking energy landscapes

1 reference

12 December 2020

HADDOCK: a protein-protein docking approach based on biochemical or biophysical information

1 reference

12 December 2020

Principles of docking: An overview of search algorithms and a guide to scoring functions

1 reference

12 December 2020

10.1007/S10858-006-0024-8

Identifiers

DOI

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Dimensions Publication ID

20 January 2020

1010313397

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