Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study (Q31033878)

28 June 2017

title

Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study (English)

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28 June 2017

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28 June 2017

5

Jimmy Eng

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28 June 2017

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David W Speicher

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28 June 2017

4

Damian Fermin

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28 June 2017

David J States

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28 June 2017

Thomas W Blackwell

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3

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28 June 2017

Samir M Hanash

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7

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28 June 2017

language of work or name

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1 March 2006

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28 June 2017

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28 June 2017

volume

24

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28 June 2017

issue

3

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28 June 2017

page(s)

333-338

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Mass spectrometry-based proteomics

28 June 2017

cites work

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Large-scale database searching using tandem mass spectra: looking up the answer in the back of the book

21 January 2018

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Improved peptide identification in proteomics by two consecutive stages of mass spectrometric fragmentation

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Annotating the human proteome

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The Human Proteome Organization: a mission to advance proteome knowledge

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The Human Proteome Organization Plasma Proteome Project pilot phase: reference specimens, technology platform comparisons, and standardized data submissions and analyses

21 January 2018

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Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database

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The International Protein Index: an integrated database for proteomics experiments

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Data management and preliminary data analysis in the pilot phase of the HUPO Plasma Proteome Project

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The need for guidelines in publication of peptide and protein identification data: Working Group on Publication Guidelines for Peptide and Protein Identification Data

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Potential for false positive identifications from large databases through tandem mass spectrometry

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A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes

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Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

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A statistical model for identifying proteins by tandem mass spectrometry

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A hypergeometric probability model for protein identification and validation using tandem mass spectral data and protein sequence databases

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Ultra-high-efficiency strong cation exchange LC/RPLC/MS/MS for high dynamic range characterization of the human plasma proteome

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Probability-based protein identification by searching sequence databases using mass spectrometry data

21 January 2018

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Improving large-scale proteomics by clustering of mass spectrometry data.

21 January 2018

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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

21 January 2018

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Immunoassay and antibody microarray analysis of the HUPO Plasma Proteome Project reference specimens: systematic variation between sample types and calibration of mass spectrometry data

21 January 2018

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Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein

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The CA 125 gene: an extracellular superstructure dominated by repeat sequences

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Beta 2 glycoprotein I--function in health and disease

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A novel four-dimensional strategy combining protein and peptide separation methods enables detection of low-abundance proteins in human plasma and serum proteomes

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Intact-protein-based High-resolution Three-dimensional Quantitative Analysis System for Proteome Profiling of Biological Fluids

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A wide range of protein isoforms in serum and plasma uncovered by a quantitative intact protein analysis system

21 January 2018

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The origins and implications of Aluternative splicing

21 January 2018

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Direct analysis of protein complexes using mass spectrometry

21 January 2018

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A model for random sampling and estimation of relative protein abundance in shotgun proteomics

21 January 2018

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Large-scale analysis of the yeast proteome by multidimensional protein identification technology

21 January 2018

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Global analysis of protein expression in yeast

21 January 2018

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The human plasma proteome: a nonredundant list developed by combination of four separate sources

21 January 2018

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An investigation into the human serum "interactome"

21 January 2018

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Proteogenomic mapping as a complementary method to perform genome annotation

21 January 2018

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Analysis of small human proteins reveals the translation of upstream open reading frames of mRNAs

21 January 2018

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Protein Identification in Complex Mixtures

21 January 2018

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inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NBT1183

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Dimensions Publication ID

28 June 2017

1028080269

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