MICCA: a complete and accurate software for taxonomic profiling of metagenomic data. (Q30954158)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25988396 AND SRC:MED&resulttype=core&format=json

8 March 2020

title

MICCA: a complete and accurate software for taxonomic profiling of metagenomic data (English)

1 reference

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8 March 2020

0 references

1 reference

3

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25988396 AND SRC:MED&resulttype=core&format=json

8 March 2020

Davide Albanese

1

1 reference

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8 March 2020

Duccio Cavalieri

4

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8 March 2020

Claudio Donati

5

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8 March 2020

author name string

Paolo Fontana

2

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8 March 2020

language of work or name

English

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publication date

19 May 2015

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8 March 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25988396 AND SRC:MED&resulttype=core&format=json

8 March 2020

volume

5

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8 March 2020

page(s)

9743

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Creative Commons Attribution 4.0 International

8 March 2020

copyright license

start time

19 May 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Simulating a population genomics data set using FlowSim

1 reference

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UPARSE: highly accurate OTU sequences from microbial amplicon reads

21 June 2018

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CLUSTOM: a novel method for clustering 16S rRNA next generation sequences by overlap minimization

21 June 2018

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phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data

21 June 2018

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Bacterial diversity, community structure and potential growth rates along an estuarine salinity gradient

21 June 2018

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A framework for human microbiome research

21 June 2018

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Grinder: a versatile amplicon and shotgun sequence simulator

21 June 2018

1 reference

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DNACLUST: accurate and efficient clustering of phylogenetic marker genes

21 June 2018

1 reference

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UCHIME improves sensitivity and speed of chimera detection

21 June 2018

1 reference

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Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation

21 June 2018

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Search and clustering orders of magnitude faster than BLAST

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4649890

QIIME allows analysis of high-throughput community sequencing data

21 June 2018

1 reference

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FastTree 2--approximately maximum-likelihood trees for large alignments

21 June 2018

1 reference

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PyNAST: a flexible tool for aligning sequences to a template alignment

21 June 2018

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Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

21 June 2018

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Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

21 June 2018

1 reference

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Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

21 June 2018

1 reference

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UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi

21 June 2018

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 June 2018

1 reference

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T-Coffee: A novel method for fast and accurate multiple sequence alignment

21 June 2018

1 reference

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Cutadapt removes adapter sequences from high-throughput sequencing reads

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038/SREP09743

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/SREP09743

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25988396 AND SRC:MED&resulttype=core&format=json

Dimensions Publication ID

8 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25988396 AND SRC:MED&resulttype=core&format=json

8 March 2020

PubMed publication ID

25988396

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25988396 AND SRC:MED&resulttype=core&format=json