BinDNase: a discriminatory approach for transcription factor binding prediction using DNase I hypersensitivity data (Q30948013)

27 June 2017

title

BinDNase: a discriminatory approach for transcription factor binding prediction using DNase I hypersensitivity data (English)

1 reference

27 June 2017

2

0 references

author name string

Juhani Kähärä

series ordinal

1

1 reference

27 June 2017

language of work or name

English

0 references

publication date

7 May 2015

1 reference

27 June 2017

1 reference

27 June 2017

volume

31

1 reference

27 June 2017

issue

17

1 reference

27 June 2017

page(s)

2852-2859

1 reference

High-resolution mapping and characterization of open chromatin across the genome

27 June 2017

cites work

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTV294

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTV294

FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTV294

Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTV294

Chromatin accessibility pre-determines glucocorticoid receptor binding patterns.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTV294

Variation in transcription factor binding among humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTV294

An expansive human regulatory lexicon encoded in transcription factor footprints

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTV294

Wellington: a novel method for the accurate identification of digital genomic footprints from DNase-seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTV294

Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTV294

Genome-wide histone acetylation data improve prediction of mammalian transcription factor binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTV294

Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTV294

DNase footprint signatures are dictated by factor dynamics and DNA sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTV294

An integrated encyclopedia of DNA elements in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTV294

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTV294

Evaluation of methods for modeling transcription factor sequence specificity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTV294

Functional polymorphism in ALOX15 results in increased allele-specific transcription in macrophages through binding of the transcription factor SPI1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTV294

Explicit DNase sequence bias modeling enables high-resolution transcription factor footprint detection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTV294

10.1093/BIOINFORMATICS/BTV294

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/KaharaL15

27 June 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference