Improved data analysis for the MinION nanopore sequencer (Q30893625)

17 August 2017

Improved data analysis for the MinION nanopore sequencer (English)

1 reference

17 August 2017

0 references

5

Benedict Paten

1 reference

17 August 2017

3

Karen H Miga

1 reference

17 August 2017

Miten Jain

1

1 reference

17 August 2017

Ian T Fiddes

series ordinal

2

1 reference

17 August 2017

Hugh E Olsen

series ordinal

4

1 reference

17 August 2017

Mark Akeson

series ordinal

6

1 reference

17 August 2017

16 February 2015

1 reference

17 August 2017

1 reference

17 August 2017

12

1 reference

17 August 2017

4

1 reference

17 August 2017

351-356

1 reference

MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island

17 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907500

A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907500

Nanopores discriminate among five C5-cytosine variants in DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907500

A first look at the Oxford Nanopore MinION sequencer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907500

Digital genotyping of macrosatellites and multicopy genes reveals novel biological functions associated with copy number variation of large tandem repeats

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907500

Error rates for nanopore discrimination among cytosine, methylcytosine, and hydroxymethylcytosine along individual DNA strands

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907500

Detection and mapping of 5-methylcytosine and 5-hydroxymethylcytosine with nanopore MspA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907500

Genomics in marine monitoring: new opportunities for assessing marine health status

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907500

Single nucleotide polymorphisms in Mycobacterium tuberculosis and the need for a curated database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907500

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907500

Dynamics of the translocation step measured in individual DNA polymerase complexes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907500

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907500

Automated forward and reverse ratcheting of DNA in a nanopore at 5-Å precision

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907500

Repetitive DNA and next-generation sequencing: computational challenges and solutions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907500

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907500

Nanopore detection of 8-oxo-7,8-dihydro-2'-deoxyguanosine in immobilized single-stranded DNA via adduct formation to the DNA damage site

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907500

Expression, tandem repeat copy number variation and stability of four macrosatellite arrays in the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907500

Incorporating sequence quality data into alignment improves DNA read mapping

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907500

Enredo and Pecan: genome-wide mammalian consistency-based multiple alignment with paralogs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907500

Identification of a new cancer/testis gene family, CT47, among expressed multicopy genes on the human X chromosome.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907500

Evolutionary HMMs: a Bayesian approach to multiple alignment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907500

Basic local alignment search tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907500

What is the expectation maximization algorithm?

21 June 2018

1 reference

Multiple alignment by sequence annealing.

21 January 2018

1 reference

Parameters for accurate genome alignment

21 January 2018

1 reference

Cactus: Algorithms for genome multiple sequence alignment

21 January 2018

1 reference

Profile hidden Markov models

21 January 2018

1 reference

BEDTools: a flexible suite of utilities for comparing genomic features

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1038/NMETH.3290

1 reference

Dimensions Publication ID

17 August 2017

0 references

1 reference

17 August 2017

PubMed publication ID

25686389

1 reference