High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry. (Q30870717)

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6 November 2019

title

High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry (English)

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6 November 2019

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1

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6 November 2019

author name string

N Tang

2

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6 November 2019

J C Hempel

3

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6 November 2019

C M Oshiro

4

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6 November 2019

E W Taylor

5

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6 November 2019

I D Kuntz

6

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6 November 2019

B W Gibson

7

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6 November 2019

G Dollinger

8

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6 November 2019

language of work or name

English

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publication date

1 May 2000

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10811876 AND SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

6 November 2019

number of pages

5

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based on heuristic

inferred from page(s)

published in

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6 November 2019

volume

97

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6 November 2019

issue

11

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6 November 2019

page(s)

5802-5806

1 reference

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Measures of residue density in protein structures

6 November 2019

cites work

1 reference

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Fast protein fold recognition via sequence to structure alignment and contact capacity potentials

28 July 2018

1 reference

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Structure and assembly of the catalytic region of human complement protease C1r: a three-dimensional model based on chemical cross-linking and homology modeling.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18514

Matrix-assisted laser desorption ion trap mass spectrometry: efficient isolation and effective fragmentation of peptide ions

28 July 2018

1 reference

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High-resolution solution structure of basic fibroblast growth factor determined by multidimensional heteronuclear magnetic resonance spectroscopy

28 July 2018

1 reference

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Structural relationships of homologous proteins as a fundamental principle in homology modeling

28 July 2018

1 reference

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Mass spectrometric sequencing of linear peptides by product-ion analysis in a reflectron time-of-flight mass spectrometer using matrix-assisted laser desorption ionization

28 July 2018

1 reference

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Enlarged representative set of protein structures

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18514

Structure of the catalytic region of human complement protease C1s: study by chemical cross-linking and three-dimensional homology modeling

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18514

SCOP: a structural classification of proteins database for the investigation of sequences and structures

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18514

Refinement of the structure of human basic fibroblast growth factor at 1.6 Å resolution and analysis of presumed heparin binding sites by selenate substitution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18514

Global Fold Determination from a Small Number of Distance Restraints

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18514

Electrospray ionization for mass spectrometry of large biomolecules

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18514

An evaluation of the combined use of nuclear magnetic resonance and distance geometry for the determination of protein conformations in solution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18514

Efficient computation of three-dimensional protein structures in solution from nuclear magnetic resonance data using the program DIANA and the supporting programs CALIBA, HABAS and GLOMSA

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18514

Three-dimensional structure of human basic fibroblast growth factor

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18514

Chemical determination of protein neighbourhoods in a cellular organelle

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18514

Enzymatic mutation detection: enrichment of heteroduplexes from hybrid DNA mixtures by cleavage-deficient GST-tagged endonuclease VII.

28 July 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.090099097

The EMBL Nucleotide Sequence Database

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.090099097

On the use of chemically derived distance constraints in the prediction of protein structure with myoglobin as an example

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.090099097

Recombinant human erythropoietin (rHuEPO): cross-linking with disuccinimidyl esters and identification of the interfacing domains in EPO.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.090099097

High-accuracy mass measurement as a tool for studying proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.090099097

Protein structure comparison by alignment of distance matrices

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.090099097

Global folding of proteins using a limited number of distance constraints

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.090099097

MONSSTER: a method for folding globular proteins with a small number of distance restraints

21 January 2018

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Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/10811876

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Techview: biochemistry. Biomolecule mass spectrometry

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/10811876

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.090099097

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10811876 AND SRC:MED&resulttype=core&format=json

6 November 2019

0 references

journals/pnas/YoungTHOTKGD00

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10811876 AND SRC:MED&resulttype=core&format=json

6 November 2019

PubMed publication ID

10811876

1 reference