A nucleosome-guided map of transcription factor binding sites in yeast (Q30837896)

12 August 2017

A nucleosome-guided map of transcription factor binding sites in yeast (English)

1 reference

12 August 2017

Alexander J Hartemink

series ordinal

3

object named as

Alexander J Hartemink

1 reference

12 August 2017

Leelavati Narlikar

1

1 reference

PMC publication ID

2065891

12 August 2017

Raluca Gordân

series ordinal

2

1 reference

12 August 2017

24 September 2007

1 reference

PLOS Computational Biology

12 August 2017

1 reference

12 August 2017

3

1 reference

12 August 2017

11

1 reference

12 August 2017

e215

1 reference

Creative Commons Attribution 4.0 International

12 August 2017

start time

9 November 2007

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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How does DNA sequence motif discovery work?

21 June 2018

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On counting position weight matrix matches in a sequence, with application to discriminative motif finding

21 June 2018

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Informative priors based on transcription factor structural class improve de novo motif discovery

21 June 2018

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A genomic code for nucleosome positioning

21 June 2018

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Regulation of mating and filamentation genes by two distinct Ste12 complexes in Saccharomyces cerevisiae

21 June 2018

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21 June 2018

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A boosting approach for motif modeling using ChIP-chip data

21 June 2018

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Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays.

21 June 2018

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Transcriptional regulatory code of a eukaryotic genome

21 June 2018

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Sequencing and comparison of yeast species to identify genes and regulatory elements

21 June 2018

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An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments

21 June 2018

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Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors

21 June 2018

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Poly(dA-dT) promoter elements increase the equilibrium accessibility of nucleosomal DNA target sites

21 June 2018

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21 June 2018

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Poly(dA.dT) sequences exist as rigid DNA structures in nucleosome-free yeast promoters in vivo

21 June 2018

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Mining for putative regulatory elements in the yeast genome using gene expression data

21 June 2018

1 reference

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Preferential accessibility of the yeast his3 promoter is determined by a general property of the DNA sequence, not by specific elements

21 June 2018

1 reference

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Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

21 June 2018

1 reference

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Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation

21 June 2018

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Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies.

21 June 2018

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A basic helix-loop-helix-leucine zipper transcription complex in yeast functions in a signaling pathway from mitochondria to the nucleus

21 June 2018

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The DAL82 protein of Saccharomyces cerevisiae binds to the DAL upstream induction sequence (UIS)

21 June 2018

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Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure.

21 June 2018

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Fitting a mixture model by expectation maximization to discover motifs in biopolymers

21 June 2018

1 reference

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Computer methods to locate signals in nucleic acid sequences

21 June 2018

1 reference

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Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065891

LEU3 of Saccharomyces cerevisiae activates multiple genes for branched-chain amino acid biosynthesis by binding to a common decanucleotide core sequence

21 June 2018

1 reference

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Evidence for nucleosome depletion at active regulatory regions genome-wide

21 June 2018

1 reference

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A gene expression map for Caenorhabditis elegans.

25 November 2018

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ANN-Spec: a method for discovering transcription factor binding sites with improved specificity.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065891

Is there left-handed DNA at the ends of yeast chromosomes?

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17997593

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17997593

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.0030215

1 reference

journals/ploscb/NarlikarGH07

12 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PMC publication ID

2065891

12 August 2017

PubMed publication ID

17997593

1 reference

PMC publication ID

2065891