Soft X-Ray Tomography Reveals Gradual Chromatin Compaction and Reorganization during Neurogenesis In Vivo (Q30830659)

20 August 2017

Soft X-Ray Tomography Reveals Gradual Chromatin Compaction and Reorganization during Neurogenesis In Vivo (English)

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20 August 2017

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5 June 2020

Angeliki Magklara

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Manolis Kellis

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Stavros Lomvardas

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5 June 2020

author name string

Mark A Le Gros

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5 June 2020

Angela Yen

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5 June 2020

Eirene Markenscoff-Papadimitriou

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5 June 2020

Bradley Colquitt

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5 June 2020

Markko Myllys

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5 June 2020

Carolyn A Larabell

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5 June 2020

language of work or name

English

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publication date

1 November 2016

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20 August 2017

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5 June 2020

volume

17

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issue

8

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5 June 2020

page(s)

2125-2136

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The 3D Genome as Moderator of Chromosomal Communication

5 June 2020

cites work

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Population-based 3D genome structure analysis reveals driving forces in spatial genome organization.

21 June 2018

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4C-ker: A Method to Reproducibly Identify Genome-Wide Interactions Captured by 4C-Seq Experiments

21 June 2018

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Perinuclear Anchoring of H3K9-Methylated Chromatin Stabilizes Induced Cell Fate in C. elegans Embryos.

21 June 2018

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Progressive Chromatin Condensation and H3K9 Methylation Regulate the Differentiation of Embryonic and Hematopoietic Stem Cells

21 June 2018

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Long-Range Regulation of V(D)J Recombination

21 June 2018

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Genome-wide maps of nuclear lamina interactions in single human cells

21 June 2018

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Monoallelic expression of olfactory receptors

21 June 2018

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Grabbing the genome by the NADs

21 June 2018

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Quantitatively imaging chromosomes by correlated cryo-fluorescence and soft x-ray tomographies

21 June 2018

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Nuclear architecture as an epigenetic regulator of neural development and function

21 June 2018

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Single-cell Hi-C reveals cell-to-cell variability in chromosome structure

21 June 2018

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Alteration of genic 5-hydroxymethylcytosine patterning in olfactory neurons correlates with changes in gene expression and cell identity

21 June 2018

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Single-cell dynamics of genome-nuclear lamina interactions

21 June 2018

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Genome architecture: domain organization of interphase chromosomes

21 June 2018

1 reference

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Spinning the web of cell fate

21 June 2018

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A conformational switch in HP1 releases auto-inhibition to drive heterochromatin assembly

21 June 2018

1 reference

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Functional implications of genome topology.

21 June 2018

1 reference

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Genome-wide chromatin state transitions associated with developmental and environmental cues

21 June 2018

1 reference

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Developmentally regulated subnuclear genome reorganization restricts neural progenitor competence in Drosophila.

21 June 2018

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Embryonic priming of a miRNA locus predetermines postmitotic neuronal left/right asymmetry in C. elegans

21 June 2018

1 reference

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Nuclear aggregation of olfactory receptor genes governs their monogenic expression

21 June 2018

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Open and closed domains in the mouse genome are configured as 10-nm chromatin fibres

21 June 2018

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Dynamic distribution of linker histone H1.5 in cellular differentiation

21 June 2018

1 reference

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The long-range interaction landscape of gene promoters

21 June 2018

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Histone h1 depletion impairs embryonic stem cell differentiation

21 June 2018

1 reference

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Topological domains in mammalian genomes identified by analysis of chromatin interactions

21 June 2018

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Human mitotic chromosomes consist predominantly of irregularly folded nucleosome fibres without a 30-nm chromatin structure

21 June 2018

1 reference

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Visualizing and quantifying cell phenotype using soft X-ray tomography

21 June 2018

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Three-dimensional folding and functional organization principles of the Drosophila genome

21 June 2018

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Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation

21 June 2018

1 reference

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Visualizing cell architecture and molecular location using soft x-ray tomography and correlated cryo-light microscopy

21 June 2018

1 reference

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Soft X-ray microscopy analysis of cell volume and hemoglobin content in erythrocytes infected with asexual and sexual stages of Plasmodium falciparum

21 June 2018

1 reference

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A conditional knockout resource for the genome-wide study of mouse gene function

21 June 2018

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Determinants of nucleosome organization in primary human cells

21 June 2018

1 reference

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An epigenetic signature for monoallelic olfactory receptor expression

21 June 2018

1 reference

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Stable and dynamic nucleosome states during a meiotic developmental process

21 June 2018

1 reference

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Transcription factories and nuclear organization of the genome

21 June 2018

1 reference

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Genome organization in and around the nucleolus

21 June 2018

1 reference

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Chromodomain-mediated oligomerization of HP1 suggests a nucleosome-bridging mechanism for heterochromatin assembly.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5135017

Distinct epigenomic landscapes of pluripotent and lineage-committed human cells.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5135017

V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5135017

Soft X-ray tomography and cryogenic light microscopy: the cool combination in cellular imaging

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5135017

The Sequence Alignment/Map format and SAMtools

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5135017

Fast and accurate short read alignment with Burrows-Wheeler transform

21 June 2018

1 reference

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Nuclear architecture of rod photoreceptor cells adapts to vision in mammalian evolution.

21 June 2018

1 reference

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Myc dynamically and preferentially relocates to a transcription factory occupied by Igh

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5135017

The multifunctional nucleolus

21 June 2018

1 reference

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A bivalent chromatin structure marks key developmental genes in embryonic stem cells

21 June 2018

1 reference

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X-ray tomography of whole cells

21 June 2018

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X-ray tomography generates 3-D reconstructions of the yeast, saccharomyces cerevisiae, at 60-nm resolution

21 June 2018

1 reference

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Domain-specific interactions of human HP1-type chromodomain proteins and inner nuclear membrane protein LBR

21 June 2018

1 reference

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Interaction between an integral protein of the nuclear envelope inner membrane and human chromodomain proteins homologous to Drosophila HP1

21 June 2018

1 reference

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Biological shape and visual science (part I)

21 June 2018

1 reference

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A lamin B receptor in the nuclear envelope

21 June 2018

1 reference

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Enhancer interaction networks as a means for singular olfactory receptor expression

21 June 2018

1 reference

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LBR and lamin A/C sequentially tether peripheral heterochromatin and inversely regulate differentiation.

25 November 2018

1 reference

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Prdm3 and Prdm16 are H3K9me1 methyltransferases required for mammalian heterochromatin integrity.

25 November 2018

1 reference

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Step-wise methylation of histone H3K9 positions heterochromatin at the nuclear periphery.

25 November 2018

1 reference

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The nucleolus: when 2 became 3.

25 November 2018

1 reference

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Polycomb-dependent regulatory contacts between distant Hox loci in Drosophila.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5135017

Mechanisms of HP1-mediated gene silencing in Drosophila

25 November 2018

1 reference

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10.1016/J.CELREP.2016.10.060

25 November 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27851973 AND SRC:MED&resulttype=core&format=json

5 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27851973 AND SRC:MED&resulttype=core&format=json

5 June 2020

PubMed publication ID

27851973

1 reference