Multi-perspective quality control of Illumina exome sequencing data using QC3. (Q30794236)

9 January 2018

title

Multi-perspective quality control of Illumina exome sequencing data using QC3. (English)

1 reference

9 January 2018

0 references

8

1 reference

9 January 2018

Brian D. Lehmann

object named as

Brian Lehmann

6

0 references

Jennifer A. Pietenpol

7

object named as

Jennifer Pietenpol

1 reference

9 January 2018

author name string

Yan Guo

1

1 reference

9 January 2018

Shilin Zhao

2

1 reference

9 January 2018

Quanhu Sheng

3

1 reference

9 January 2018

Fei Ye

4

1 reference

9 January 2018

Jiang Li

5

1 reference

9 January 2018

Yu Shyr

9

1 reference

9 January 2018

publication date

3 April 2014

1 reference

9 January 2018

published in

Genomics

1 reference

9 January 2018

volume

103

1 reference

9 January 2018

issue

5-6

1 reference

9 January 2018

page(s)

323-328

1 reference

9 January 2018

Three-stage quality control strategies for DNA re-sequencing data

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755963

Finding the lost treasures in exome sequencing data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755963

QC-Chain: fast and holistic quality control method for next-generation sequencing data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755963

MitoSeek: extracting mitochondria information and performing high-throughput mitochondria sequencing analysis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755963

Exome sequencing generates high quality data in non-target regions

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755963

NGS QC Toolkit: a toolkit for quality control of next generation sequencing data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755963

Exome sequencing as a tool for Mendelian disease gene discovery

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755963

Targeted enrichment beyond the consensus coding DNA sequence exome reveals exons with higher variant densities

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755963

A framework for variation discovery and genotyping using next-generation DNA sequencing data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755963

Quality control and preprocessing of metagenomic datasets

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755963

SAMStat: monitoring biases in next generation sequencing data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755963

A map of human genome variation from population-scale sequencing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755963

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755963

Sequencing of 50 human exomes reveals adaptation to high altitude

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755963

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755963

Exome sequencing identifies the cause of a mendelian disorder

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755963

The Sequence Alignment/Map format and SAMtools

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755963

Fast and accurate short read alignment with Burrows-Wheeler transform

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755963

Synonymous and nonsynonymous rate variation in nuclear genes of mammals.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755963

Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755963

Base-Calling of Automated Sequencer Traces UsingPhred. I. Accuracy Assessment

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755963

Use of Ranks in One-Criterion Variance Analysis

14 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1016/J.YGENO.2014.03.006

10.1016/J.YGENO.2014.03.006

7 January 2021

Identifiers

DOI

1 reference

9 January 2018

PMC publication ID

5755963

1 reference

9 January 2018

PubMed publication ID

24703969

1 reference

9 January 2018