PRADA: pipeline for RNA sequencing data analysis (Q30792172)

6 November 2017

PRADA: pipeline for RNA sequencing data analysis (English)

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6 November 2017

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9

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Andrey Sivachenko

3

object named as

Andrey Sivachenko

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6 November 2017

10

Roel G W Verhaak

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6 November 2017

Wandaliz Torres-García

1

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6 November 2017

Siyuan Zheng

2

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6 November 2017

Rahulsimham Vegesna

4

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6 November 2017

Qianghu Wang

5

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6 November 2017

Rong Yao

6

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6 November 2017

Michael F Berger

7

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6 November 2017

John N Weinstein

8

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6 November 2017

language of work or name

English

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publication date

1 April 2014

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6 November 2017

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6 November 2017

30

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6 November 2017

15

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6 November 2017

2224-2226

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A survey of intragenic breakpoints in glioblastoma identifies a distinct subset associated with poor survival

6 November 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103589

Comprehensive molecular characterization of clear cell renal cell carcinoma

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103589

Transforming fusions of FGFR and TACC genes in human glioblastoma

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103589

RNA-SeQC: RNA-seq metrics for quality control and process optimization

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103589

TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103589

deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103589

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103589

Integrative analysis of the melanoma transcriptome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103589

Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103589

The Sequence Alignment/Map format and SAMtools

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103589

Fast and accurate short read alignment with Burrows-Wheeler transform

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103589

Genotype, haplotype and copy-number variation in worldwide human populations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103589

10.1093/BIOINFORMATICS/BTU169

20 June 2018

Identifiers

DOI

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journals/bioinformatics/Torres-GarciaZSVWYBWGV14

6 November 2017

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DBLP Dataset 2021-01-02

28 January 2021

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6 November 2017

PubMed publication ID

24695405

1 reference