AbsCN-seq: a statistical method to estimate tumor purity, ploidy and absolute copy numbers from next-generation sequencing data. (Q30726126)

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4 March 2020

title

AbsCN-seq: a statistical method to estimate tumor purity, ploidy and absolute copy numbers from next-generation sequencing data (English)

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4 March 2020

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Lei Bao

1

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4 March 2020

Minya Pu

series ordinal

2

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4 March 2020

Karen Messer

series ordinal

3

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4 March 2020

language of work or name

English

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publication date

2 January 2014

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4 March 2020

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volume

30

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issue

8

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page(s)

1056-1063

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A concordance correlation coefficient to evaluate reproducibility

4 March 2020

cites work

1 reference

12 December 2020

TumorBoost: normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays

1 reference

12 December 2020

BACOM: in silico detection of genomic deletion types and correction of normal cell contamination in copy number data

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Low-coverage sequencing: implications for design of complex trait association studies

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A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

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Flexible and accurate detection of genomic copy-number changes from aCGH.

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Karyotypic complexity of the NCI-60 drug-screening panel.

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The NCBI dbGaP database of genotypes and phenotypes

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Allele-specific amplification in cancer revealed by SNP array analysis

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VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing

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12 December 2020

The Sequence Alignment/Map format and SAMtools

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12 December 2020

The landscape of somatic copy-number alteration across human cancers

1 reference

12 December 2020

Cancer. Immune surveillance from chromosomal chaos?

1 reference

12 December 2020

PurityEst: estimating purity of human tumor samples using next-generation sequencing data

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12 December 2020

Comprehensive genomic characterization defines human glioblastoma genes and core pathways

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12 December 2020

A framework for variation discovery and genotyping using next-generation DNA sequencing data

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12 December 2020

Genomic copy number determination in cancer cells from single nucleotide polymorphism microarrays based on quantitative genotyping corrected for aneuploidy.

1 reference

12 December 2020

A statistical approach for detecting genomic aberrations in heterogeneous tumor samples from single nucleotide polymorphism genotyping data

1 reference

12 December 2020

Circular binary segmentation for the analysis of array-based DNA copy number data

1 reference

12 December 2020

THetA: inferring intra-tumor heterogeneity from high-throughput DNA sequencing data

1 reference

12 December 2020

Correcting for cancer genome size and tumour cell content enables better estimation of copy number alterations from next-generation sequence data

1 reference

12 December 2020

CNV-seq, a new method to detect copy number variation using high-throughput sequencing

1 reference

12 December 2020

The exomes of the NCI-60 panel: a genomic resource for cancer biology and systems pharmacology

1 reference

12 December 2020

Sequence analysis of mutations and translocations across breast cancer subtypes

1 reference

12 December 2020

Absolute quantification of somatic DNA alterations in human cancer

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12 December 2020

PICNIC: an algorithm to predict absolute allelic copy number variation with microarray cancer data

1 reference

12 December 2020

Allele-specific copy number analysis of tumors

1 reference

12 December 2020

10.1093/BIOINFORMATICS/BTT759

Identifiers

DOI

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journals/bioinformatics/BaoPM14

4 March 2020

DBLP publication ID

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DBLP Dataset 2021-01-02

28 January 2021

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4 March 2020

PubMed publication ID

24389661

1 reference

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