DuctApe: a suite for the analysis and correlation of genomic and OmniLog™ Phenotype Microarray data (Q30710605)

26 June 2017

title

DuctApe: a suite for the analysis and correlation of genomic and OmniLog™ Phenotype Microarray data (English)

1 reference

26 June 2017

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24316132 AND SRC:MED&resulttype=core&format=json

10 June 2020

Alessio Mengoni

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24316132 AND SRC:MED&resulttype=core&format=json

10 June 2020

Stefano Mocali

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24316132 AND SRC:MED&resulttype=core&format=json

10 June 2020

Roberto Semeraro

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24316132 AND SRC:MED&resulttype=core&format=json

10 June 2020

Alessandro Florio

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24316132 AND SRC:MED&resulttype=core&format=json

10 June 2020

6

Marco Bazzicalupo

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24316132 AND SRC:MED&resulttype=core&format=json

10 June 2020

3

Emanuele G Biondi

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24316132 AND SRC:MED&resulttype=core&format=json

10 June 2020

author name string

Anna Benedetti

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24316132 AND SRC:MED&resulttype=core&format=json

10 June 2020

language of work or name

1 reference

4 December 2013

1 reference

26 June 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24316132 AND SRC:MED&resulttype=core&format=json

10 June 2020

volume

103

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24316132 AND SRC:MED&resulttype=core&format=json

10 June 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24316132 AND SRC:MED&resulttype=core&format=json

10 June 2020

page(s)

1-10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24316132 AND SRC:MED&resulttype=core&format=json

Phenotype Sequencing: Identifying the Genes That Cause a Phenotype Directly from Pooled Sequencing of Independent Mutants

10 June 2020

cites work

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

A whole-cell computational model predicts phenotype from genotype

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

PhenoLink--a web-tool for linking phenotype to ~omics data for bacteria: application to gene-trait matching for Lactobacillus plantarum strains

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

Sequencing technologies - the next generation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

The impact of next-generation sequencing technology on genetics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

KEGG: kyoto encyclopedia of genes and genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

Integrating multiple 'omics' analysis for microbial biology: application and methodologies

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

Phenotype microarrays for high-throughput phenotypic testing and assay of gene function

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

PhD: a web database application for phenotype data management

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

PheMaDB: a solution for storage, retrieval, and analysis of high throughput phenotype data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

Visualization and curve-parameter estimation strategies for efficient exploration of phenotype microarray kinetics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

opm: an R package for analysing OmniLog(R) phenotype microarray data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

Metabolic capacity of Sinorhizobium (Ensifer) meliloti strains as determined by phenotype MicroArray analysis.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

Involvement of the oscA gene in the sulphur starvation response and in Cr(VI) resistance in Pseudomonas corrugata 28.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

The success of acinetobacter species; genetic, metabolic and virulence attributes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

High-throughput generation, optimization and analysis of genome-scale metabolic models

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

Towards multidimensional genome annotation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

Phenotype microarray profiling of Zymomonas mobilis ZM4

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

KAAS: an automatic genome annotation and pathway reconstruction server

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

BLAST : architecture and applications

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

Biopython: freely available Python tools for computational molecular biology and bioinformatics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

The NumPy Array: A Structure for Efficient Numerical Computation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

Matplotlib: A 2D Graphics Environment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

Bidirectional best hits miss many orthologs in duplication-rich clades such as plants and animals

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

Who belongs in the family?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

Evolution of enzymatic activities in the enolase superfamily: characterization of the (D)-glucarate/galactarate catabolic pathway in Escherichia coli

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

Hydrogen-stimulated carbon acquisition and conservation in Salmonella enterica serovar Typhimurium

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

Molecular mechanisms of ethanol-induced pathogenesis revealed by RNA-sequencing

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

Functional expression of the glucose transporter of Zymomonas mobilis leads to restoration of glucose and fructose uptake in Escherichia coli mutants and provides evidence for its facilitator action

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005

Metabolic capacity of Bacillus cereus strains ATCC 14579 and ATCC 10987 interlinked with comparative genomics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YGENO.2013.11.005