TCC: an R package for comparing tag count data with robust normalization strategies (Q30654220)

16 October 2017

TCC: an R package for comparing tag count data with robust normalization strategies (English)

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16 October 2017

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Jianqiang Sun

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Koji Kadota

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Koji Kadota

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4

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author name string

Tomoaki Nishiyama

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2

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16 October 2017

Kentaro Shimizu

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16 October 2017

9 July 2013

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16 October 2017

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16 October 2017

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16 October 2017

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describes a project that uses

16 October 2017

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DESeq

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

edgeR

object named as

R package edgeR

edgeR

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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Detecting differential usage of exons from RNA-seq data

20 June 2018

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20 June 2018

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20 June 2018

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A normalization strategy for comparing tag count data

20 June 2018

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20 June 2018

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20 June 2018

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20 June 2018

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Differential expression analysis for sequence count data

20 June 2018

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baySeq: empirical Bayesian methods for identifying differential expression in sequence count data

20 June 2018

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A scaling normalization method for differential expression analysis of RNA-seq data

20 June 2018

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Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

20 June 2018

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20 June 2018

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3' tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome Analyzer

20 June 2018

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

20 June 2018

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20 June 2018

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20 June 2018

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20 June 2018

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A weighted average difference method for detecting differentially expressed genes from microarray data

20 June 2018

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RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

20 June 2018

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

20 June 2018

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20 June 2018

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Next-generation sequencing transforms today's biology

20 June 2018

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Small-sample estimation of negative binomial dispersion, with applications to SAGE data

20 June 2018

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20 June 2018

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A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

20 June 2018

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20 June 2018

Identifiers

DOI

10.1186/1471-2105-14-219

1 reference

16 October 2017

journals/bmcbi/SunNSK13

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

16 October 2017

PubMed publication ID

23837715

1 reference