Reference-free SNP discovery for the Eurasian beaver from restriction site-associated DNA paired-end data (Q30592670)

25 June 2017

title

Reference-free SNP discovery for the Eurasian beaver from restriction site-associated DNA paired-end data (English)

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25 June 2017

Karim Gharbi

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Zamin Iqbal

object named as

Zamin Iqbal

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Frank Rosell

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object named as

Frank Rosell

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Helen Senn

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Rob Ogden

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Ross McEwing

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Timothee Cezard

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Eric Johnson

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Nick Kamps-Hughes

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publication date

21 February 2013

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volume

22

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issue

11

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page(s)

3141-3150

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RAD sequencing yields a high success rate for westslope cutthroat and rainbow trout species-diagnostic SNP assays

25 June 2017

cites work

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Sequence diversity of the MHC DRB gene in the Eurasian beaver (Castor fiber).

21 January 2018

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Rapid SNP discovery and genetic mapping using sequenced RAD markers

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Linkage mapping and comparative genomics using next-generation RAD sequencing of a non-model organism

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The influence of mean climate trends and climate variance on beaver survival and recruitment dynamics

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Stacks: building and genotyping Loci de novo from short-read sequences

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Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads

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Isolation and characterization of microsatellite loci in the beaver (Castor canadensis)

21 January 2018

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Genome-wide genetic marker discovery and genotyping using next-generation sequencing

21 January 2018

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Mitochondrial phylogeography of the Eurasian beaver Castor fiber L.

21 January 2018

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Major histocompatibility complex monomorphism and low levels of DNA fingerprinting variability in a reintroduced and rapidly expanding population of beavers

21 January 2018

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Local de novo assembly of RAD paired-end contigs using short sequencing reads

21 January 2018

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A map of human genome variation from population-scale sequencing

21 January 2018

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Determination of ancestral alleles for human single-nucleotide polymorphisms using high-density oligonucleotide arrays

21 January 2018

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Sourcing Eurasian beaver Castor fiber stock for reintroductions in Great Britain and Western Europe

21 January 2018

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Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout

21 January 2018

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A new algorithm for DNA sequence assembly

21 January 2018

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De novo assembly and genotyping of variants using colored de Bruijn graphs

21 January 2018

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The development of a genome wide SNP set for the Barnacle goose Branta leucopsis.

21 January 2018

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Assessment of the functionality of genome-wide canine SNP arrays and implications for canine disease association studies

21 January 2018

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Large scale single nucleotide polymorphism discovery in unsequenced genomes using second generation high throughput sequencing technology: applied to turkey

21 January 2018

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A genome wide survey of SNP variation reveals the genetic structure of sheep breeds

21 January 2018

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LOCAS--a low coverage assembly tool for resequencing projects

21 January 2018

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Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos).

21 January 2018

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Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads

21 January 2018

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Reintroducing the European Beaver to Britain: nostalgic meddling or restoring biodiversity?

21 January 2018

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Development and characterization of a high density SNP genotyping assay for cattle

21 January 2018

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A conserved haplotype controls parallel adaptation in geographically distant salmonid populations

21 January 2018

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Comeback of the beaver Castor fiber: An overview of old and new conservation problems

21 January 2018

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Unlocking the potential of genomic technologies for wildlife forensics

21 January 2018

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genalex 6: genetic analysis in Excel. Population genetic software for teaching and research

21 January 2018

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Development of nine new microsatellite loci for the American beaver, Castor canadensis (Rodentia: Castoridae), and cross-species amplification in the European beaver, Castor fiber

21 January 2018

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An Eulerian path approach to DNA fragment assembly

21 January 2018

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Integrative genomics viewer

21 January 2018

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RAD tag sequencing as a source of SNP markers in Cynara cardunculus L.

21 January 2018

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Paired-end RAD-seq for de novo assembly and marker design without available reference

21 January 2018

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 January 2018

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21 January 2018

Identifiers

DOI

10.1111/MEC.12242

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25 June 2017

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