Estimating relative abundances of proteins from shotgun proteomics data (Q30577922)

26 September 2017

1 reference

title

Estimating relative abundances of proteins from shotgun proteomics data (English)

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26 September 2017

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6

William Stafford Noble

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26 September 2017

5

Michael J MacCoss

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26 September 2017

4

Edwin W Rubel

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26 September 2017

Sean McIlwain

1

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26 September 2017

Michael Mathews

series ordinal

2

1 reference

26 September 2017

Michael S Bereman

series ordinal

3

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26 September 2017

19 November 2012

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26 September 2017

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26 September 2017

13

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26 September 2017

308

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The mzIdentML data standard for mass spectrometry-based proteomics results

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599300

Direct Maximization of Protein Identifications from Tandem Mass Spectra

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599300

Less label, more free: approaches in label-free quantitative mass spectrometry.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599300

PepC: proteomics software for identifying differentially expressed proteins based on spectral counting

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599300

Detecting cross-linked peptides by searching against a database of cross-linked peptide pairs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599300

emPAI Calc--for the estimation of protein abundance from large-scale identification data by liquid chromatography-tandem mass spectrometry

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599300

Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599300

Comparison of database search strategies for high precursor mass accuracy MS/MS data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599300

Statistical calibration of the SEQUEST XCorr function

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599300

The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599300

Label-free mass spectrometry-based protein quantification technologies in proteomic analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599300

Assigning significance to peptides identified by tandem mass spectrometry using decoy databases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599300

Proteomic parsimony through bipartite graph analysis improves accuracy and transparency

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599300

Quantitative proteomic analysis of distinct mammalian Mediator complexes using normalized spectral abundance factors

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599300

A uniform proteomics MS/MS analysis platform utilizing open XML file formats

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599300

Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599300

Refinements to label free proteome quantitation: how to deal with peptides shared by multiple proteins

20 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186/1471-2105-13-308

Rapid and accurate peptide identification from tandem mass spectra

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186/1471-2105-13-308

A comparison of MS2-based label-free quantitative proteomic techniques with regards to accuracy and precision

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186/1471-2105-13-308

Scaffold: a bioinformatic tool for validating MS/MS-based proteomic studies

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23164367

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-13-308

1 reference

journals/bmcbi/McIlwainMBRMN12

26 September 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

26 September 2017

PubMed publication ID

23164367

1 reference