MetabR: an R script for linear model analysis of quantitative metabolomic data (Q30575389)

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16 February 2020

title

MetabR: an R script for linear model analysis of quantitative metabolomic data (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23111096 AND SRC:MED&resulttype=core&format=json

16 February 2020

3

1 reference

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16 February 2020

Arnold M Saxton

series ordinal

4

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16 February 2020

5

Brynn H Voy

1 reference

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16 February 2020

author name string

Ben Ernest

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23111096 AND SRC:MED&resulttype=core&format=json

16 February 2020

Jessica R Gooding

series ordinal

2

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16 February 2020

publication date

30 October 2012

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16 February 2020

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16 February 2020

volume

5

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16 February 2020

page(s)

596

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Transcriptomic and metabolomic profiling of chicken adipose tissue in response to insulin neutralization and fasting

16 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532230

IDEOM: an Excel interface for analysis of LC-MS-based metabolomics data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532230

Pancreatic β-cell death in response to pro-inflammatory cytokines is distinct from genuine apoptosis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532230

Metabolomics in systems microbiology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532230

Metabolomic Analysis and Visualization Engine for LC−MS Data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532230

Antifolate-induced depletion of intracellular glycine and purines inhibits thymineless death in E. coli

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532230

Knowledge discovery in metabolomics: an overview of MS data handling

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532230

Insulin resistance is associated with a metabolic profile of altered protein metabolism in Chinese and Asian-Indian men

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532230

Pathway projector: web-based zoomable pathway browser using KEGG atlas and Google Maps API

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532230

Linear mixed model selection for false discovery rate control in microarray data analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532230

MetaboAnalyst: a web server for metabolomic data analysis and interpretation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532230

An integrated approach for the analysis of biological pathways using mixed models

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532230

lumi: a pipeline for processing Illumina microarray

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532230

Quorum sensing controls biofilm formation in Vibrio cholerae through modulation of cyclic di-GMP levels and repression of vpsT

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532230

XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532230

Analysis of oligonucleotide array experiments with repeated measures using mixed models

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532230

Gene expression profiling in human preadipocytes and adipocytes by microarray analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532230

Normalization of cDNA microarray data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532230

Metabonomics: a platform for studying drug toxicity and gene function

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532230

Assessing gene significance from cDNA microarray expression data via mixed models

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532230

A systematic statistical linear modeling approach to oligonucleotide array experiments

20 June 2018

1 reference

https://api.crossref.org/works/10.1186/1756-0500-5-596

Analysis of whole-genome microarray replicates using mixed models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1756-0500-5-596

Separation and quantitation of water soluble cellular metabolites by hydrophilic interaction chromatography-tandem mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1756-0500-5-596

Insulin immuno-neutralization in chicken: effects on insulin signaling and gene expression in liver and muscle

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1756-0500-5-596

Using Linear Mixed Models for Normalization of cDNA Microarrays

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23111096

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Optimal designs for one- and two-color microarrays using mixed models: a comparative evaluation of their efficiencies

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23111096

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1756-0500-5-596

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23111096 AND SRC:MED&resulttype=core&format=json

Dimensions Publication ID

16 February 2020

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1756-0500-5-596

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23111096 AND SRC:MED&resulttype=core&format=json

16 February 2020

PubMed publication ID

23111096

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23111096 AND SRC:MED&resulttype=core&format=json