Computational analysis of local membrane properties (Q30562222)

20 August 2017

Computational analysis of local membrane properties (English)

1 reference

20 August 2017

1

Vytautas Gapsys

1 reference

20 August 2017

Bert L de Groot

2

1 reference

PMC publication ID

3882000

20 August 2017

Rodolfo Briones

series ordinal

3

1 reference

20 August 2017

23 October 2013

1 reference

Journal of Computer - Aided Molecular Design

20 August 2017

1 reference

20 August 2017

27

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20 August 2017

10

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20 August 2017

845-858

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Creative Commons Attribution 2.0 Generic

20 August 2017

start time

1 October 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Design of peptide-membrane interactions to modulate single-file water transport through modified gramicidin channels

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

How the amyloid-β peptide and membranes affect each other: an extensive simulation study

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Line-tension controlled mechanism for influenza fusion

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Determination of electron density profiles and area from simulations of undulating membranes.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

MDAnalysis: A toolkit for the analysis of molecular dynamics simulations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Functional dynamics in the voltage-dependent anion channel

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Emerging roles for lipids in shaping membrane-protein function.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

The crystal structure of mouse VDAC1 at 2.3 A resolution reveals mechanistic insights into metabolite gating

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

The molecular face of lipid rafts in model membranes.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Ordering effects of cholesterol and its analogues

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Protein modulation of lipids, and vice-versa, in membranes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Assessing the nature of lipid raft membranes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Canonical sampling through velocity rescaling

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Areas of molecules in membranes consisting of mixtures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Lipids do influence protein function-the hydrophobic matching hypothesis revisited

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Sphingomyelin-cholesterol domains in phospholipid membranes: atomistic simulation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Cationic DMPC/DMTAP lipid bilayers: molecular dynamics study.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Molecular dynamics simulations of phospholipid bilayers with cholesterol

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Cholesterol-induced modifications in lipid bilayers: a simulation study

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Physical principles underlying the transduction of bilayer deformation forces during mechanosensitive channel gating

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Structure of lipid bilayers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Structure of dipalmitoylphosphatidylcholine/cholesterol bilayer at low and high cholesterol concentrations: molecular dynamics simulation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Functional rafts in cell membranes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Permeation of hydrophilic solutes through mitochondrial outer membranes: review on mitochondrial porins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Behavior of cholesterol and its effect on head group and chain conformations in lipid bilayers: a molecular dynamics study

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Molecular order and dynamics of phosphatidylcholine bilayer membranes in the presence of cholesterol, ergosterol and lanosterol: a comparative study using 2H-, 13C- and 31P-NMR spectroscopy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Effect of cholesterol and water on the rigidity and order of phosphatidylcholine bilayers.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Modulation of phospholipid acyl chain order by cholesterol. A solid-state 2H nuclear magnetic resonance study

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Activation of beef-heart cytochrome c oxidase by cardiolipin and analogues of cardiolipin

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Molecular order in cis and trans unsaturated phospholipid bilayers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Spectroscopic studies of specifically deuterium labeled membrane systems. Nuclear magnetic resonance investigation of the effects of cholesterol in model systems

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

Perturbation of membranes by the amyloid beta-peptide--a molecular dynamics study

20 June 2018

1 reference

https://api.crossref.org/works/10.1007/S10822-013-9684-0

Molecular dynamics simulation of HIV fusion inhibitor T-1249: insights on peptide-lipid interaction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10822-013-9684-0

Multi-scale simulation of the simian immunodeficiency virus fusion peptide.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10822-013-9684-0

Effects of cholesterol on pore formation in lipid bilayers induced by human islet amyloid polypeptide fragments: a coarse-grained molecular dynamics study.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10822-013-9684-0

GridMAT-MD: a grid-based membrane analysis tool for use with molecular dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10822-013-9684-0

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10822-013-9684-0

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10822-013-9684-0

The N-terminal 12 residue long peptide of HIV gp41 is the minimal peptide sufficient to induce significant T-cell-like membrane destabilization in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10822-013-9684-0

The voltage-dependent anion channel-1 modulates apoptotic cell death.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10822-013-9684-0

Large influence of cholesterol on solute partitioning into lipid membranes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10822-013-9684-0

Structure and orientation study of fusion peptide FP23 of gp41 from HIV-1 alone or inserted into various lipid membrane models (mono-, bi- and multibi-layers) by FT-IR spectroscopies and Brewster angle microscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10822-013-9684-0

Modulating membrane properties: the effect of trehalose and cholesterol on a phospholipid bilayer

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10822-013-9684-0

Non-polar interactions between cholesterol and phospholipids: a molecular dynamics simulation study

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10822-013-9684-0

Molecular dynamics with coupling to an external bath

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10822-013-9684-0

Spin-label studies on phosphatidylcholine-cholesterol membranes: effects of alkyl chain length and unsaturation in the fluid phase

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882000

G Protein-Coupled Receptors Self-Assemble in Dynamics Simulations of Model Bilayers

26 November 2018

1 reference

https://api.crossref.org/works/10.1007/S10822-013-9684-0

Free energy of WALP23 dimer association in DMPC, DPPC, and DOPC bilayers

21 January 2018

1 reference

12 December 2020

Lipids in the structure, folding, and function of the KcsA K channel

1 reference

12 December 2020

Molecular dynamics simulations of T-20 HIV fusion inhibitor interacting with model membranes

1 reference

12 December 2020

Analysis of lipid surface area in protein-membrane systems combining voronoi tessellation and monte carlo integration methods

1 reference

12 December 2020

10.1007/S10822-013-9684-0

Identifiers

DOI

1 reference

journals/jcamd/GapsysGB13

20 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PMC publication ID

3882000

20 August 2017

PubMed publication ID

24150904

1 reference

PMC publication ID

3882000