Copynumber: Efficient algorithms for single- and multi-track copy number segmentation (Q30536665)

15 August 2017

Copynumber: Efficient algorithms for single- and multi-track copy number segmentation (English)

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15 August 2017

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Anne-Lise Børresen-Dale

11

object named as

Anne-Lise Børresen-Dale

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Hans Kristian Moen Vollan

15 August 2017

4

object named as

Hans Kristian Moen Vollan

1 reference

15 August 2017

9

Lars O Baumbusch

1 reference

15 August 2017

Ole Christian Lingjærde

12

object named as

Ole Christian Lingjaerde

1 reference

15 August 2017

2

Knut Liestøl

1 reference

15 August 2017

10

Carlos Caldas

1 reference

15 August 2017

3

Peter Van Loo

1 reference

15 August 2017

7

Suet-Feung Chin

1 reference

15 August 2017

6

Oscar M Rueda

1 reference

15 August 2017

Gro Nilsen

1

1 reference

15 August 2017

Marianne B Eide

5

1 reference

15 August 2017

Roslin Russell

8

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15 August 2017

language of work or name

English

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publication date

4 November 2012

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15 August 2017

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15 August 2017

13

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15 August 2017

591

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Detecting simultaneous changepoints in multiple sequences

15 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

Intratumor Heterogeneity and Branched Evolution Revealed by Multiregion Sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

High-resolution analyses of copy number changes in disseminated tumor cells of patients with breast cancer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

An all-statistics, high-speed algorithm for the analysis of copy number variation in genomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

Allele-specific copy number analysis of tumors

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

Genomic architecture characterizes tumor progression paths and fate in breast cancer patients

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

FACADE: a fast and sensitive algorithm for the segmentation and calling of high resolution array CGH data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

The landscape of somatic copy-number alteration across human cancers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

Joint estimation of DNA copy number from multiple platforms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

Hidden Markov models for the assessment of chromosomal alterations using high-throughput SNP arrays

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

A fast and flexible method for the segmentation of aCGH data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

Identification of cancer genes using a statistical framework for multiexperiment analysis of nondiscretized array CGH data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

Assessing the significance of chromosomal aberrations in cancer: methodology and application to glioma

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

Breaking the waves: improved detection of copy number variation from microarray-based comparative genomic hybridization.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

Modeling recurrent DNA copy number alterations in array CGH data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

Challenges and standards in integrating surveys of structural variation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

Spatial smoothing and hot spot detection for CGH data using the fused lasso

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

A forward-backward fragment assembling algorithm for the identification of genomic amplification and deletion breakpoints using high-density single nucleotide polymorphism (SNP) array

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

A modified Bayes information criterion with applications to the analysis of comparative genomic hybridization data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

A faster circular binary segmentation algorithm for the analysis of array CGH data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

A comparison study: applying segmentation to array CGH data for downstream analyses

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

A statistical approach for array CGH data analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

A method for calling gains and losses in array CGH data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

Circular binary segmentation for the analysis of array-based DNA copy number data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

Analysis of array CGH data: from signal ratio to gain and loss of DNA regions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

High-resolution characterization of the pancreatic adenocarcinoma genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

Joint segmentation, calling, and normalization of multiple CGH profiles

20 June 2018

1 reference

https://api.crossref.org/works/10.1186/1471-2164-13-591

Multi-platform segmentation for joint detection of copy number variants

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1471-2164-13-591

Genomic alterations reveal potential for higher grade transformation in follicular lymphoma and confirm parallel evolution of tumor cell clones.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1471-2164-13-591

CGHweb: a tool for comparing DNA copy number segmentations from multiple algorithms

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1471-2164-13-591

MSB: a mean-shift-based approach for the analysis of structural variation in the genome

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582591

Detection of isolated tumor cells in bone marrow is an independent prognostic factor in breast cancer

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23442169

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-13-591

1 reference

Dimensions Publication ID

15 August 2017

0 references

1 reference

15 August 2017

PubMed publication ID

23442169

1 reference