Multiple pathways guide oxygen diffusion into flavoenzyme active sites (Q30488313)

19 August 2017

Multiple pathways guide oxygen diffusion into flavoenzyme active sites (English)

1 reference

19 August 2017

11

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19 August 2017

Andrea Alfieri

6

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Federico Forneris

object named as

Federico Forneris

7

0 references

Pimchai Chaiyen

object named as

Pimchai Chaiyen

9

0 references

J. Andrew McCammon

12

object named as

J Andrew McCammon

1 reference

19 August 2017

3

Pirom Chenprakhon

1 reference

19 August 2017

4

Kittisak Thotsaporn

1 reference

19 August 2017

Riccardo Baron

1

1 reference

19 August 2017

Conor Riley

2

1 reference

19 August 2017

Remko T Winter

5

1 reference

19 August 2017

Willem J H van Berkel

8

1 reference

19 August 2017

Marco W Fraaije

10

1 reference

19 August 2017

language of work or name

English

0 references

publication date

16 June 2009

1 reference

19 August 2017

6

1 reference

Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

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19 August 2017

106

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19 August 2017

26

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19 August 2017

10603-10608

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Design and engineering of an O(2) transport protein

19 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

Biologically inspired oxidation catalysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

Identification of the oxygen activation site in monomeric sarcosine oxidase: role of Lys265 in catalysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

On the oxygen reactivity of flavoprotein oxidases: an oxygen access tunnel and gate in brevibacterium sterolicum cholesterol oxidase.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

The Binding and Release of Oxygen and Hydrogen Peroxide Are Directed by a Hydrophobic Tunnel in Cholesterol Oxidase †

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

Structural analysis of the catalytic mechanism and stereoselectivity in Streptomyces coelicolor alditol oxidase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

Substrate activation for O2 reactions by oxidized metal centers in biology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

Molecular dioxygen enters the active site of 12/15-lipoxygenase via dynamic oxygen access channels

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

Structural basis for cofactor-independent dioxygenation in vancomycin biosynthesis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

Exploring Molecular Oxygen Pathways in Hansenula polymorpha Copper-containing Amine Oxidase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

Structure of the monooxygenase component of a two-component flavoprotein monooxygenase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

Biomolecular modeling: Goals, problems, perspectives

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

Molecular dynamics: survey of methods for simulating the activity of proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

Atomic description of an enzyme reaction dominated by proton tunneling

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

To be or not to be an oxidase: challenging the oxygen reactivity of flavoenzymes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

The GROMOS software for biomolecular simulation: GROMOS05.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

Finding gas diffusion pathways in proteins: application to O2 and H2 transport in CpI [FeFe]-hydrogenase and the role of packing defects

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

Molecular dynamics and experimental investigation of H(2) and O(2) diffusion in [Fe]-hydrogenase.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

Protein dynamics and electrostatics in the function of p-hydroxybenzoate hydroxylase.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

Unveiling functional protein motions with picosecond x-ray crystallography and molecular dynamics simulations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

A fast pairlist-construction algorithm for molecular simulations under periodic boundary conditions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

Sub-atomic resolution crystal structure of cholesterol oxidase: what atomic resolution crystallography reveals about enzyme mechanism and the role of the FAD cofactor in redox activity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

Molecular recognition of oxygen by protein mimics: dynamics on the femtosecond to microsecond time scale

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

Structure of a ligand-binding intermediate in wild-type carbonmonoxy myoglobin

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

VMD: visual molecular dynamics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

Activation of molecular oxygen by flavins and flavoproteins.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

Introduction: flavoprotein structure and mechanism.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

Oxygen distribution and migration within Mbdes Fe and Hbdes Fe. Multifrequency phase and modulation fluorometry study

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

Quenching of fluorescence by oxygen. Probe for structural fluctuations in macromolecules

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

Regulation of Oxygen Affinity of Hemoglobin: Influence of Structure of the Globin on the Heme Iron

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2698890

Penetration of dioxygen into proteins studied by quenching of phosphorescence and fluorescence

20 June 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.0903809106

Watching a protein as it functions with 150-ps time-resolved x-ray crystallography

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.0903809106

Oxygen isotope effects on electron transfer to O2 probed using chemically modified flavins bound to glucose oxidase

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.0903809106

Discovery, characterization, and kinetic analysis of an alditol oxidase from Streptomyces coelicolor.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.0903809106

Identification of a gatekeeper residue that prevents dehydrogenases from acting as oxidases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.0903809106

Detection of a C4a-Hydroperoxyflavin Intermediate in the Reaction of a Flavoprotein Oxidase†

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.0903809106

Kinetic Mechanisms of the Oxygenase from a Two-component Enzyme,p-Hydroxyphenylacetate 3-Hydroxylase fromAcinetobacter baumannii

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.0903809106

Penetration of small molecules into proteins studied by quenching of phosphorescence and fluorescence

21 January 2018

1 reference

12 December 2020

Channelling of dioxygen into the respiratory enzyme

1 reference

12 December 2020

Oxygen-linked equilibrium CuB-CO species in cytochrome ba3 oxidase from thermus thermophilus. Implications for an oxygen channel ar the CuB site

1 reference

12 December 2020

Oxygen and proton pathways in cytochrome c oxidase

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0903809106

1 reference

19 August 2017

0 references

1 reference

19 August 2017

PubMed publication ID

19541622

1 reference