Viral population analysis and minority-variant detection using short read next-generation sequencing. (Q30426786)

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23 February 2020

title

Viral population analysis and minority-variant detection using short read next-generation sequencing (English)

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23 February 2020

5

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23 February 2020

Daniel P Depledge

3

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23 February 2020

Paul Kellam

7

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23 February 2020

Simon J Watson

1

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Menno D de Jong

6

object named as

Menno D de Jong

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23 February 2020

author name string

Matthijs R A Welkers

2

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23 February 2020

Eve Coulter

4

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23 February 2020

language of work or name

English

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publication date

4 February 2013

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Philosophical Transactions of the Royal Society B

23 February 2020

published in

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23 February 2020

volume

368

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23 February 2020

issue

1614

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23 February 2020

page(s)

20120205

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Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II.

23 February 2020

cites work

1 reference

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Evolutionary dynamics of local pandemic H1N1/2009 influenza virus lineages revealed by whole-genome analysis

20 June 2018

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Detection of inferred CCR5- and CXCR4-using HIV-1 variants and evolutionary intermediates using ultra-deep pyrosequencing

20 June 2018

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CANGS DB: a stand-alone web-based database tool for processing, managing and analyzing 454 data in biodiversity studies

20 June 2018

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Sequence-specific error profile of Illumina sequencers

20 June 2018

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Quality control and preprocessing of metagenomic datasets

20 June 2018

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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

20 June 2018

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Sequencing technologies - the next generation

20 June 2018

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The Sequence Alignment/Map format and SAMtools

20 June 2018

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Detection of low-frequency pretherapy chemokine (CXC motif) receptor 4 (CXCR4)-using HIV-1 with ultra-deep pyrosequencing.

20 June 2018

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Viral population estimation using pyrosequencing

20 June 2018

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Accuracy and quality of massively parallel DNA pyrosequencing

20 June 2018

1 reference

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Characterization of mutation spectra with ultra-deep pyrosequencing: application to HIV-1 drug resistance

20 June 2018

1 reference

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The population genetics and evolutionary epidemiology of RNA viruses

20 June 2018

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SSAHA: a fast search method for large DNA databases

20 June 2018

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Nevirapine resistance mutations of human immunodeficiency virus type 1 selected during therapy

20 June 2018

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Chemotaxis in Escherichia coli: a molecular model for robust precise adaptation

20 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1098/RSTB.2012.0205

Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1098/RSTB.2012.0205

Pyrobayes: an improved base caller for SNP discovery in pyrosequences

21 January 2018

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21 January 2018

Identifiers

DOI

10.1098/RSTB.2012.0205

1 reference

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23 February 2020

1 reference

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23 February 2020

PubMed publication ID

23382427

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23382427 AND SRC:MED&resulttype=core&format=json