Assessment of template based protein structure predictions in CASP9. (Q30408257)

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14 January 2020

title

Assessment of template based protein structure predictions in CASP9 (English)

1 reference

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protein structure prediction

14 January 2020

main subject

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author

Juergen Haas

4

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14 January 2020

Torsten Schwede

5

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14 January 2020

author name string

Valerio Mariani

1

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14 January 2020

Florian Kiefer

2

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14 January 2020

Tobias Schmidt

3

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14 January 2020

language of work or name

English

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publication date

15 October 2011

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14 January 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22002823 AND SRC:MED&resulttype=core&format=json

14 January 2020

volume

79 Suppl 10

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page(s)

37-58

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Outcome of a workshop on applications of protein models in biomedical research

14 January 2020

cites work

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CDD: a Conserved Domain Database for the functional annotation of proteins

21 January 2018

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SUPERFAMILY 1.75 including a domain-centric gene ontology method

21 January 2018

1 reference

Gene3D: merging structure and function for a Thousand genomes

21 January 2018

1 reference

Improved molecular replacement by density- and energy-guided protein structure optimization

21 January 2018

1 reference

The JCSG MR pipeline: optimized alignments, multiple models and parallel searches

21 January 2018

1 reference

Discovery of a dipeptide epimerase enzymatic function guided by homology modeling and virtual screening

21 January 2018

1 reference

Computational Design of Proteins Targeting the Conserved Stem Region of Influenza Hemagglutinin

21 January 2018

1 reference

Structural symmetry and protein function

21 January 2018

1 reference

The power of two: protein dimerization in biology

21 January 2018

1 reference

Target highlights in CASP9: Experimental target structures for the critical assessment of techniques for protein structure prediction

21 January 2018

1 reference

CASP9 target classification

21 January 2018

1 reference

LGA: A method for finding 3D similarities in protein structures

21 January 2018

1 reference

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

1 reference

Evaluation of model quality predictions in CASP9

21 January 2018

1 reference

Domain definition and target classification for CASP7

21 January 2018

1 reference

Target domain definition and classification in CASP8

21 January 2018

1 reference

Automated server predictions in CASP7

21 January 2018

1 reference

Evaluation of template-based models in CASP8 with standard measures

21 January 2018

1 reference

The other 90% of the protein: assessment beyond the Calphas for CASP8 template-based and high-accuracy models

21 January 2018

1 reference

Assessment of CASP7 predictions for template-based modeling targets

21 January 2018

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CASP8 results in context of previous experiments

21 January 2018

1 reference

Errors in protein structures

21 January 2018

1 reference

PROCHECK: a program to check the stereochemical quality of protein structures

21 January 2018

1 reference

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids

21 January 2018

1 reference

Analysis of CASP8 targets, predictions and assessment methods.

21 January 2018

1 reference

Assessment of homology-based predictions in CASP5.

21 January 2018

1 reference

Fast and accurate automatic structure prediction with HHpred.

21 January 2018

1 reference

Protein homology detection by HMM-HMM comparison

21 January 2018

1 reference

Hidden Markov model speed heuristic and iterative HMM search procedure

21 January 2018

1 reference

Detection of distant evolutionary relationships between protein families using theory of sequence profile-profile comparison.

21 January 2018

1 reference

Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction.

21 January 2018

1 reference

Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8.

21 January 2018

1 reference

Progress from CASP6 to CASP7.

21 January 2018

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CASP9 results compared to those of previous CASP experiments

21 January 2018

1 reference

Automated tertiary structure prediction with accurate local model quality assessment using the IntFOLD-TS method

21 January 2018

1 reference

Analysis and prediction of protein quaternary structure

21 January 2018

1 reference

Assessment of ligand-binding residue predictions in CASP9.

21 January 2018

1 reference

Scoring function for automated assessment of protein structure template quality

21 January 2018

1 reference

OpenStructure: a flexible software framework for computational structural biology

21 January 2018

1 reference

PISCES: a protein sequence culling server

21 January 2018

1 reference

The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data

21 January 2018

1 reference

Inference of macromolecular assemblies from crystalline state

21 January 2018

1 reference

Predicting protein structures with a multiplayer online game

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1002/PROT.23177

1 reference

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14 January 2020

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