Species matter: the role of competition in the assembly of congeneric bacteria (Q30407734)

21 August 2017

Species matter: the role of competition in the assembly of congeneric bacteria (English)

1 reference

21 August 2017

Alexander F Koeppel

1

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Martin Wu

object named as

Martin Wu

series ordinal

2

0 references

publication date

17 October 2013

1 reference

21 August 2017

1 reference

21 August 2017

8

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21 August 2017

3

1 reference

21 August 2017

531-540

1 reference

Phylogenetic clustering increases with elevation for microbes.

21 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Surprisingly extensive mixed phylogenetic and ecological signals among bacterial Operational Taxonomic Units

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Stochastic and deterministic assembly processes in subsurface microbial communities

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Phylogenetic analysis suggests that habitat filtering is structuring marine bacterial communities across the globe

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Accelerated Profile HMM Searches

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Niche conservatism as an emerging principle in ecology and conservation biology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Opposing effects of competitive exclusion on the phylogenetic structure of communities

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

QIIME allows analysis of high-throughput community sequencing data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Bacterial competition: surviving and thriving in the microbial jungle

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Topographical and temporal diversity of the human skin microbiome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

The merging of community ecology and phylogenetic biology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Phylogenetic resolution and quantifying the phylogenetic diversity and dispersion of communities

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Emerging patterns in the comparative analysis of phylogenetic community structure.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

The origins of ecological diversity in prokaryotes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

A simple, fast, and accurate method of phylogenomic inference

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Phylogenetic analysis of community assembly and structure over space and time

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Colloquium paper: microbes on mountainsides: contrasting elevational patterns of bacterial and plant diversity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Phylocom: software for the analysis of phylogenetic community structure and trait evolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Phylogenetic niche conservatism, phylogenetic signal and the relationship between phylogenetic relatedness and ecological similarity among species

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Identifying the fundamental units of bacterial diversity: a paradigm shift to incorporate ecology into bacterial systematics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Phylogenetic ecology of the freshwater Actinobacteria acI lineage

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Large variabilities in host strain susceptibility and phage host range govern interactions between lytic marine phages and their Flavobacterium hosts.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Genomics, environmental genomics and the issue of microbial species.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

A systematics for discovering the fundamental units of bacterial diversity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

DNA-DNA hybridization values and their relationship to whole-genome sequence similarities

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Microbial ecology: human gut microbes associated with obesity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

The bacterial species dilemma and the genomic-phylogenetic species concept

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Cyanobacterial ecotypes in the microbial mat community of Mushroom Spring (Yellowstone National Park, Wyoming) as species-like units linking microbial community composition, structure and function

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Phylogenetic clustering and overdispersion in bacterial communities

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Phylogeny and the hierarchical organization of plant diversity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Phylogenetic analysis of the evolution of the niche in lizards of the Anolis sagrei group

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Toward a census of bacteria in soil

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Opinion: Re-evaluating prokaryotic species

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Fine-scale phylogenetic architecture of a complex bacterial community.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Phylogenetic overdispersion in Floridian oak communities.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Niche tradeoffs, neutrality, and community structure: a stochastic theory of resource competition, invasion, and community assembly

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

MUSCLE: multiple sequence alignment with high accuracy and high throughput

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Cyanophages infecting the oceanic cyanobacterium Prochlorococcus

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Niche lability in the evolution of a Caribbean lizard community.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Community assembly and invasion: an experimental test of neutral versus niche processes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

SAR11 clade dominates ocean surface bacterioplankton communities.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

What are bacterial species?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Counting the uncountable: statistical approaches to estimating microbial diversity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

Phylogenetic structure of Floridian plant communities depends on taxonomic and spatial scale

20 June 2018

1 reference

https://api.crossref.org/works/10.1038/ISMEJ.2013.180

A common tendency for phylogenetic overdispersion in mammalian assemblages.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038/ISMEJ.2013.180

The fate of competing beneficial mutations in an asexual population.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038/ISMEJ.2013.180

Resource partitioning and sympatric differentiation among closely related bacterioplankton.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038/ISMEJ.2013.180

Trait evolution, community assembly, and the phylogenetic structure of ecological communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1038/ISMEJ.2013.180

Global patterns in the phylogenetic structure of island mammal assemblages

21 January 2018

1 reference

https://api.crossref.org/works/10.1038/ISMEJ.2013.180

Adaptive radiation in a heterogeneous environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1038/ISMEJ.2013.180

Ecological niche differentiation in the Aphelocoma jays: a phylogenetic perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1038/ISMEJ.2013.180

Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038/ISMEJ.2013.180

Genotypic diversity within a natural coastal bacterioplankton population.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038/ISMEJ.2013.180

Phylogenies and Community Ecology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038/ISMEJ.2013.180

Is there a cost of virus resistance in marine cyanobacteria?

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930319

26 November 2018

Identifiers

DOI

10.1038/ISMEJ.2013.180

1 reference

PMC publication ID

3930319

Dimensions Publication ID

21 August 2017

0 references

1 reference

PMC publication ID

3930319

21 August 2017

PubMed publication ID

24132075

1 reference

PMC publication ID

3930319