You are lost without a map: Navigating the sea of protein structures (Q30370362)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25554228 AND SRC:MED&resulttype=core&format=json

26 February 2020

review article

1 reference

title

You are lost without a map: Navigating the sea of protein structures (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25554228 AND SRC:MED&resulttype=core&format=json

26 February 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25554228 AND SRC:MED&resulttype=core&format=json

26 February 2020

3

Nicholas R Silvaggi

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25554228 AND SRC:MED&resulttype=core&format=json

26 February 2020

2

T Joseph Kappock

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25554228 AND SRC:MED&resulttype=core&format=json

26 February 2020

language of work or name

English

0 references

publication date

29 December 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25554228 AND SRC:MED&resulttype=core&format=json

Biochimica et Biophysica Acta

26 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25554228 AND SRC:MED&resulttype=core&format=json

26 February 2020

volume

1854

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25554228 AND SRC:MED&resulttype=core&format=json

26 February 2020

issue

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25554228 AND SRC:MED&resulttype=core&format=json

26 February 2020

page(s)

258-268

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25554228 AND SRC:MED&resulttype=core&format=json

Avoidable errors in deposited macromolecular structures: an impediment to efficient data mining

26 February 2020

cites work

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Using ¹⁵N-ammonium to characterise and map potassium binding sites in proteins by NMR spectroscopy

3 June 2018

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Integrated description of protein dynamics from room-temperature X-ray crystallography and NMR

3 June 2018

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Protein conformational populations and functionally relevant substates.

3 June 2018

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The good, the bad and the dubious: VHELIBS, a validation helper for ligands and binding sites

3 June 2018

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Structural and Functional Characterization of MppR, an Enduracididine Biosynthetic Enzyme from Streptomyces hygroscopicus : Functional Diversity in the Acetoacetate Decarboxylase-like Superfamily

3 June 2018

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3 June 2018

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Detection and analysis of unusual features in the structural model and structure-factor data of a birch pollen allergen.

3 June 2018

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Botulinum Neurotoxin Is Shielded by NTNHA in an Interlocked Complex

3 June 2018

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3 June 2018

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Accessing protein conformational ensembles using room-temperature X-ray crystallography

3 June 2018

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Biomolecules in the computer: Jmol to the rescue

3 June 2018

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Features and development of Coot

3 June 2018

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PHENIX: a comprehensive Python-based system for macromolecular structure solution

3 June 2018

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MolProbity: all-atom structure validation for macromolecular crystallography

3 June 2018

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Hidden alternative structures of proline isomerase essential for catalysis

3 June 2018

1 reference

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Global distribution of conformational states derived from redundant models in the PDB points to non-uniqueness of the protein structure.

3 June 2018

1 reference

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Limitations and lessons in the use of X-ray structural information in drug design

3 June 2018

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Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7

3 June 2018

1 reference

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Catalytic features of the botulinum neurotoxin A light chain revealed by high resolution structure of an inhibitory peptide complex

3 June 2018

1 reference

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Iterative-build OMIT maps: map improvement by iterative model building and refinement without model bias

3 June 2018

1 reference

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Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5051661

Protein crystallography for non-crystallographers, or how to get the best (but not more) from published macromolecular structures.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5051661

Sampling of the native conformational ensemble of myoglobin via structures in different crystalline environments

3 June 2018

1 reference

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Structures of Clostridium botulinum Neurotoxin Serotype A Light Chain complexed with small-molecule inhibitors highlight active-site flexibility

3 June 2018

1 reference

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The Buccaneer software for automated model building. 1. Tracing protein chains

3 June 2018

1 reference

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Relation between native ensembles and experimental structures of proteins

3 June 2018

1 reference

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Structural mechanism for sterol sensing and transport by OSBP-related proteins

3 June 2018

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A molecular viewer for the analysis of TLS rigid-body motion in macromolecules

3 June 2018

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The Uppsala Electron-Density Server

3 June 2018

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Coot: model-building tools for molecular graphics

3 June 2018

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The CCP4 suite: programs for protein crystallography

3 June 2018

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3 June 2018

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Heterogeneity and inaccuracy in protein structures solved by X-ray crystallography.

3 June 2018

1 reference

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Announcing the worldwide Protein Data Bank

3 June 2018

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Molecular Structure of Nucleic Acids: Molecular Structure of Deoxypentose Nucleic Acids

3 June 2018

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3 June 2018

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AstexViewer: a visualisation aid for structure-based drug design

26 November 2018

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Application and limitations of X-ray crystallographic data in structure-based ligand and drug design

3 June 2018

1 reference

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Use of TLS parameters to model anisotropic displacements in macromolecular refinement

3 June 2018

1 reference

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Validation of protein crystal structures

3 June 2018

1 reference

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Glassy behavior of a protein.

3 June 2018

1 reference

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The Structure of the Potassium Channel: Molecular Basis of K Conduction and Selectivity

3 June 2018

1 reference

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Improved methods for building protein models in electron density maps and the location of errors in these models

3 June 2018

1 reference

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Techniques, tools and best practices for ligand electron-density analysis and results from their application to deposited crystal structures

3 June 2018

1 reference

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Temperature-Dependent Dynamical Transitions of Different Classes of Amino Acid Residue in a Globular Protein

26 November 2018

1 reference

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Statistical quality indicators for electron-density maps

26 November 2018

1 reference

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On the relationship between diffraction patterns and motions in macromolecular crystals

26 November 2018

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Molecular configuration in sodium thymonucleate. 1953.

26 November 2018

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A structure for deoxyribose nucleic acid. 1953.

26 November 2018

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Is one solution good enough?

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25554228

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Study of protein dynamics by X-ray diffraction

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25554228

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.BBAPAP.2014.12.021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25554228 AND SRC:MED&resulttype=core&format=json

26 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25554228 AND SRC:MED&resulttype=core&format=json

26 February 2020

PubMed publication ID

25554228

1 reference