GENN: a GEneral Neural Network for learning tabulated data with examples from protein structure prediction. (Q30369671)

PubMed publication ID

25502381

21 June 2017

title

GENN: a GEneral Neural Network for learning tabulated data with examples from protein structure prediction (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6930076&resulttype=core&format=json

protein structure prediction

13 May 2020

main subject

0 references

artificial neural network

1 reference

2

Andrzej Kloczkowski

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6930076&resulttype=core&format=json

13 May 2020

author name string

Eshel Faraggi

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6930076&resulttype=core&format=json

13 May 2020

language of work or name

English

0 references

publication date

1 January 2015

1 reference

PubMed publication ID

25502381

Methods in Molecular Biology

21 June 2017

published in

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6930076&resulttype=core&format=json

13 May 2020

volume

1260

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6930076&resulttype=core&format=json

13 May 2020

page(s)

165-178

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6930076&resulttype=core&format=json

How significant is a protein structure similarity with TM-score = 0.5?

13 May 2020

cites work

1 reference

12 December 2020

Gene expression profiling for the prediction of therapeutic response to docetaxel in patients with breast cancer

1 reference

12 December 2020

A global machine learning based scoring function for protein structure prediction.

1 reference

12 December 2020

Assessment of a novel scoring method based on solvent accessible surface area descriptors

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12 December 2020

Empirical Predictions of Protein Conformation

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12 December 2020

Review: protein secondary structure prediction continues to rise.

1 reference

12 December 2020

Predicting continuous local structure and the effect of its substitution for secondary structure in fragment-free protein structure prediction

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12 December 2020

Global protein function prediction from protein-protein interaction networks

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12 December 2020

Scoring function for automated assessment of protein structure template quality

1 reference

12 December 2020

Improving the prediction accuracy of residue solvent accessibility and real-value backbone torsion angles of proteins by guided-learning through a two-layer neural network.

1 reference

12 December 2020

SPINE-D: accurate prediction of short and long disordered regions by a single neural-network based method

1 reference

12 December 2020

Fluctuations of backbone torsion angles obtained from NMR-determined structures and their prediction

1 reference

12 December 2020

A novel side-chain orientation dependent potential derived from random-walk reference state for protein fold selection and structure prediction

1 reference

12 December 2020

Predicting basal metabolic rate, new standards and review of previous work

1 reference

12 December 2020

Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction

1 reference

12 December 2020

Protein function prediction via graph kernels

1 reference

12 December 2020

Critical assessment of methods of protein structure prediction (CASP)--round IX

1 reference

12 December 2020

Multibody coarse-grained potentials for native structure recognition and quality assessment of protein models

1 reference

12 December 2020

Amino acid hydrophobicity and accessible surface area

1 reference

12 December 2020

Analysis and prediction of RNA-binding residues using sequence, evolutionary conservation, and predicted secondary structure and solvent accessibility

1 reference

12 December 2020

Accurate prediction of protein folding rates from sequence and sequence-derived residue flexibility and solvent accessibility

1 reference

12 December 2020

Ab initio folding of terminal segments with secondary structures reveals the fine difference between two closely related all-atom statistical energy functions

1 reference

12 December 2020

A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction.

1 reference

12 December 2020

Knowledge-based prediction of protein structures and the design of novel molecules

1 reference

12 December 2020

Solvent accessible surface area approximations for rapid and accurate protein structure prediction.

1 reference

12 December 2020

On the relation between residue flexibility and local solvent accessibility in proteins

1 reference

12 December 2020

SPINE X: improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles

1 reference

12 December 2020

Real-SPINE: an integrated system of neural networks for real-value prediction of protein structural properties

1 reference

12 December 2020

Real-value prediction of backbone torsion angles.

1 reference

12 December 2020

Potentials 'R' Us web-server for protein energy estimations with coarse-grained knowledge-based potentials

1 reference

12 December 2020

A sequence‐based computational model for the prediction of the solvent accessible surface area for α‐helix and β‐barrel transmembrane residues

1 reference

12 December 2020

Four-body contact potentials derived from two protein datasets to discriminate native structures from decoys

1 reference

12 December 2020

Hydrophobic bonding and accessible surface area in proteins

1 reference

12 December 2020

10.1007/978-1-4939-2239-0_10

Identifiers

DOI

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30 July 2022

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30 July 2022