Identification of ultramodified proteins using top-down tandem mass spectra. (Q30355214)

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29 February 2020

title

Identification of ultramodified proteins using top-down tandem mass spectra (English)

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29 February 2020

1

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29 February 2020

6

Pavel A Pevzner

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29 February 2020

author name string

Shawna Hengel

2

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29 February 2020

Si Wu

3

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29 February 2020

Nikola Tolić

4

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29 February 2020

Ljiljana Pasa-Tolić

5

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29 February 2020

language of work or name

English

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publication date

15 November 2013

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Journal of Proteome Research

29 February 2020

published in

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29 February 2020

volume

12

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issue

12

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29 February 2020

page(s)

5830-5838

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Fast multi-blind modification search through tandem mass spectrometry

29 February 2020

cites work

1 reference

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Reorganizing the protein space at the Universal Protein Resource (UniProt)

3 June 2018

1 reference

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Mapping intact protein isoforms in discovery mode using top-down proteomics

3 June 2018

1 reference

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Protein identification using top-down.

3 June 2018

1 reference

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Breaking the histone code with quantitative mass spectrometry.

3 June 2018

1 reference

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Two-dimensional liquid chromatography system for online top-down mass spectrometry

3 June 2018

1 reference

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Deconvolution and database search of complex tandem mass spectra of intact proteins: a combinatorial approach

3 June 2018

1 reference

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A novel approach for untargeted post-translational modification identification using integer linear optimization and tandem mass spectrometry.

3 June 2018

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Data processing algorithms for analysis of high resolution MSMS spectra of peptides with complex patterns of posttranslational modifications

3 June 2018

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A mixed integer linear optimization framework for the identification and quantification of targeted post-translational modifications of highly modified proteins using multiplexed electron transfer dissociation tandem mass spectrometry

3 June 2018

1 reference

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High throughput characterization of combinatorial histone codes

3 June 2018

1 reference

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Methods for analyzing peptides and proteins on a chromatographic timescale by electron-transfer dissociation mass spectrometry

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905687

Spectral dictionaries: Integrating de novo peptide sequencing with database search of tandem mass spectra

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905687

Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905687

ProSight PTM 2.0: improved protein identification and characterization for top down mass spectrometry

3 June 2018

1 reference

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Lookup peaks: a hybrid of de novo sequencing and database search for protein identification by tandem mass spectrometry

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905687

Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905687

Identification of post-translational modifications by blind search of mass spectra.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905687

How does the histone code work?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905687

Mass spectrometry-based proteomics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905687

Efficiency of database search for identification of mutated and modified proteins via mass spectrometry

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905687

The language of covalent histone modifications

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905687

Sequence database searches via de novo peptide sequencing by tandem mass spectrometry

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905687

Interpreting top-down mass spectra using spectral alignment.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905687

InsPecT: identification of posttranslationally modified peptides from tandem mass spectra

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905687

Mutation-tolerant protein identification by mass spectrometry

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905687

Automated reduction and interpretation of high resolution electrospray mass spectra of large molecules

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905687

Pervasive combinatorial modification of histone H3 in human cells

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24188097

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/PR400849Y

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24188097 AND SRC:MED&resulttype=core&format=json

29 February 2020

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29 February 2020

PubMed publication ID

24188097

1 reference