Evaluating CASP4 predictions with physical energy functions. (Q30331647)

18 June 2017

title

Evaluating CASP4 predictions with physical energy functions. (English)

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18 June 2017

Michael Feig

1

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18 June 2017

Charles L Brooks

series ordinal

2

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18 June 2017

language of work or name

English

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publication date

1 November 2002

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18 June 2017

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18 June 2017

volume

49

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18 June 2017

issue

2

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18 June 2017

page(s)

232-245

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Critical assessment of methods of protein structure prediction (CASP): round IV.

18 June 2017

cites work

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Functional inferences from blind ab initio protein structure predictions.

21 January 2018

1 reference

Effective energy functions for protein structure prediction.

21 January 2018

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Free-energy calculations highlight differences in accuracy between X-ray and NMR structures and add value to protein structure prediction.

21 January 2018

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Semianalytical treatment of solvation for molecular mechanics and dynamics

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Pairwise solute descreening of solute charges from a dielectric medium

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1 reference

Atomic solvation parameters applied to molecular dynamics of proteins in solution

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1 reference

Evaluation of a fast implicit solvent model for molecular dynamics simulations

21 January 2018

1 reference

Discrimination of the native from misfolded protein models with an energy function including implicit solvation

21 January 2018

1 reference

Identifying native-like protein structures using physics-based potentials

21 January 2018

1 reference

Unfolded conformations of alpha-lytic protease are more stable than its native state

21 January 2018

1 reference

Energy functions that discriminate X-ray and near native folds from well-constructed decoys

21 January 2018

1 reference

A distance-dependent atomic knowledge-based potential for improved protein structure selection.

21 January 2018

1 reference

Free energies of protein decoys provide insight into determinants of protein stability

21 January 2018

1 reference

Prediction targets of CASP4

21 January 2018

1 reference

CAFASP2: the second critical assessment of fully automated structure prediction methods

21 January 2018

1 reference

Backbone-dependent rotamer library for proteins. Application to side-chain prediction

21 January 2018

1 reference

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

All-atom empirical potential for molecular modeling and dynamics studies of proteins

21 January 2018

1 reference

Extracting hydrophobic free energies from experimental data: relationship to protein folding and theoretical models

21 January 2018

1 reference

A simple method for displaying the hydropathic character of a protein

21 January 2018

1 reference

Modern protein force fields behave comparably in molecular dynamics simulations

21 January 2018

1 reference

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

21 January 2018

1 reference

Spin glasses and the statistical mechanics of protein folding

21 January 2018

1 reference

The Levinthal paradox: yesterday and today

21 January 2018

1 reference

2.1 and 1.8 A average C(alpha) RMSD structure predictions on two small proteins, HP-36 and s15.

21 January 2018

1 reference

Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.

21 January 2018

1 reference

Evolution and physics in comparative protein structure modeling.

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1002/PROT.10217

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18 June 2017

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