How to describe protein motion without amino acid sequence and atomic coordinates. (Q30330511)

13 September 2017

How to describe protein motion without amino acid sequence and atomic coordinates. (English)

1 reference

13 September 2017

Dengming Ming

1

1 reference

13 September 2017

Yifei Kong

2

1 reference

13 September 2017

Maxime A Lambert

3

1 reference

13 September 2017

Zhong Huang

4

1 reference

13 September 2017

Jianpeng Ma

5

1 reference

13 September 2017

language of work or name

English

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publication date

1 June 2002

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Proceedings of the National Academy of Sciences of the United States of America

13 September 2017

6

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based on heuristic

inferred from page(s)

published in

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13 September 2017

99

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13 September 2017

13

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13 September 2017

8620-8625

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All-atom empirical potential for molecular modeling and dynamics studies of proteins

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124334

Dynamics of large proteins through hierarchical levels of coarse-grained structures.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124334

Intrinsic flexibility and gating mechanism of the potassium channel KcsA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124334

Flexibility and packing in proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124334

Conformational change of proteins arising from normal mode calculations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124334

Anisotropy of fluctuation dynamics of proteins with an elastic network model

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124334

A dynamic model for the allosteric mechanism of GroEL

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124334

Domain motions of EF-G bound to the 70S ribosome: insights from a hand-shaking between multi-resolution structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124334

Situs: A package for docking crystal structures into low-resolution maps from electron microscopy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124334

Structure of pig plasma retinol-binding protein at 1.65 A resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124334

The allosteric mechanism of the chaperonin GroEL: a dynamic analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124334

Ligand-induced conformational changes in ras p21: a normal mode and energy minimization analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124334

Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124334

Structural mechanisms for domain movements in proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124334

Structure of ferricytochrome c' from Rhodospirillum molischianum at 1.67 A resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124334

Analysis of the low frequency normal modes of the T-state of aspartate transcarbamylase.

20 June 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.082148899

Hinge-bending motion in citrate synthase arising from normal mode calculations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.082148899

;Neural-gas' network for vector quantization and its application to time-series prediction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.082148899

Self-organizing neural networks bridge the biomolecular resolution gap.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.082148899

Gaussian Dynamics of Folded Proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.082148899

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.082148899

Electron cryomicroscopy and bioinformatics suggest protein fold models for rice dwarf virus

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.082148899

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.082148899

Tertiary and quaternary conformational changes in aspartate transcarbamylase: a normal mode study

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12084922

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Analysis of the low-frequency normal modes of the R state of aspartate transcarbamylase and a comparison with the T state modes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12084922

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.082148899

1 reference

13 September 2017

0 references

1 reference

13 September 2017

PubMed publication ID

12084922

1 reference