Phylogenetic Profiles Reveal Structural and Functional Determinants of Lipid-binding (Q30157037)

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13 February 2020

title

Phylogenetic Profiles Reveal Structural and Functional Determinants of Lipid-binding (English)

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13 February 2020

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2

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13 February 2020

Gaurav Bhardwaj

4

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13 February 2020

author name string

Yoojin Hong

1

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13 February 2020

Kyung Dae Ko

3

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13 February 2020

Gue Su Chang

5

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13 February 2020

Damian B van Rossum

6

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13 February 2020

Randen L Patterson

7

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13 February 2020

publication date

1 March 2009

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Journal of Proteomics and Bioinformatics

13 February 2020

published in

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13 February 2020

volume

2

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13 February 2020

page(s)

139-149

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Glutamatergic regulation of serine racemase via reversal of PIP2 inhibition

13 February 2020

cites work

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TRP_2, a lipid/trafficking domain that mediates diacylglycerol-induced vesicle fusion

3 June 2018

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Phylogenetic profiles reveal evolutionary relationships within the "twilight zone" of sequence similarity

3 June 2018

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Naturally occurring Bruton's tyrosine kinase mutations have no dominant negative effect in an X-linked agammaglobulinaemia cellular model.

3 June 2018

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HSP90 regulates cell survival via inositol hexakisphosphate kinase-2.

3 June 2018

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Predicting protein function with hierarchical phylogenetic profiles: the Gene3D Phylo-Tuner method applied to eukaryotic genomes

3 June 2018

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3 June 2018

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An improved method for identifying functionally linked proteins using phylogenetic profiles

3 June 2018

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Ancient origin of the new developmental superfamily DANGER

3 June 2018

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Action of TFII-I outside the nucleus as an inhibitor of agonist-induced calcium entry

3 June 2018

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3 June 2018

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Phosphoinositide, phosphopeptide and pyridone interactions of the Abl SH2 domain

3 June 2018

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TEC-family kinases: regulators of T-helper-cell differentiation

3 June 2018

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Phospholipase Cgamma1 controls surface expression of TRPC3 through an intermolecular PH domain

3 June 2018

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The SH2 domain: versatile signaling module and pharmaceutical target

3 June 2018

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CDD: a Conserved Domain Database for protein classification

3 June 2018

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The Gene Ontology (GO) database and informatics resource

3 June 2018

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SMART 4.0: towards genomic data integration

3 June 2018

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Global analysis of protein activities using proteome chips

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2782862

GAP1IP4BP contains a novel group I pleckstrin homology domain that directs constitutive plasma membrane association.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2782862

Family pairwise search with embedded motif models

3 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2782862

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

3 June 2018

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3 June 2018

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Embedding strategies for effective use of information from multiple sequence alignments

3 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2782862

Prediction of protein folding class using global description of amino acid sequence

3 June 2018

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Prediction of the functional class of lipid binding proteins from sequence-derived properties irrespective of sequence similarity

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2782862

Locally defined protein phylogenetic profiles reveal previously missed protein interactions and functional relationships

26 November 2018

1 reference

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Support vector machines for prediction of protein domain structural class

26 November 2018

1 reference

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Phosphatidylinositol (3,4,5)P3 interacts with SH2 domains and modulates PI 3-kinase association with tyrosine-phosphorylated proteins

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19946567

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Overlapping genes and information theory

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19946567

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.4172/JPB.1000071

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19946567 AND SRC:MED&resulttype=core&format=json

13 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19946567 AND SRC:MED&resulttype=core&format=json

13 February 2020

PubMed publication ID

19946567

1 reference