Stepwise unfolding of a β barrel protein by the AAA ClpXP protease. (Q30155499)

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9 February 2020

title

Stepwise unfolding of a β barrel protein by the AAA ClpXP protease (English)

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9 February 2020

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3

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9 February 2020

author name string

Andrew R Nager

series ordinal

1

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9 February 2020

Tania A Baker

series ordinal

2

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9 February 2020

language of work or name

English

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publication date

29 July 2011

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Journal of Molecular Biology

9 February 2020

published in

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9 February 2020

volume

413

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9 February 2020

issue

1

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9 February 2020

page(s)

4-16

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ClpX(P) generates mechanical force to unfold and translocate its protein substrates

9 February 2020

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1 reference

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Single-molecule protein unfolding and translocation by an ATP-fueled proteolytic machine.

3 June 2018

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ATP-dependent proteases differ substantially in their ability to unfold globular proteins

3 June 2018

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Complementation and reconstitution of fluorescence from circularly permuted and truncated green fluorescent protein

3 June 2018

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Recognition of misfolded proteins by Lon, a AAA( ) protease

3 June 2018

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An alternate proton acceptor for excited-state proton transfer in green fluorescent protein: rewiring GFP

3 June 2018

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Lon protease degrades transfer-messenger RNA-tagged proteins

3 June 2018

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3 June 2018

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Partitioning between unfolding and release of native domains during ClpXP degradation determines substrate selectivity and partial processing

3 June 2018

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Role of the processing pore of the ClpX AAA ATPase in the recognition and engagement of specific protein substrates

3 June 2018

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Distinct peptide signals in the UmuD and UmuD' subunits of UmuD/D' mediate tethering and substrate processing by the ClpXP protease.

3 June 2018

1 reference

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Lack of a robust unfoldase activity confers a unique level of substrate specificity to the universal AAA protease FtsH.

3 June 2018

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Overlapping recognition determinants within the ssrA degradation tag allow modulation of proteolysis.

3 June 2018

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Effects of protein stability and structure on substrate processing by the ClpXP unfolding and degradation machine

3 June 2018

1 reference

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A specificity-enhancing factor for the ClpXP degradation machine

3 June 2018

1 reference

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Unfolding and internalization of proteins by the ATP-dependent proteases ClpXP and ClpAP.

3 June 2018

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Circular permutation and receptor insertion within green fluorescent proteins

3 June 2018

1 reference

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The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system

3 June 2018

1 reference

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Inhibition of ubiquitin/proteasome-dependent protein degradation by the Gly-Ala repeat domain of the Epstein-Barr virus nuclear antigen 1.

3 June 2018

1 reference

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Chromophore formation in green fluorescent protein

3 June 2018

1 reference

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Ultra-fast excited state dynamics in green fluorescent protein: multiple states and proton transfer

3 June 2018

1 reference

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Crystal structure of the Aequorea victoria green fluorescent protein

3 June 2018

1 reference

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Understanding, improving and using green fluorescent proteins

3 June 2018

1 reference

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The ubiquitin-proteasome pathway is required for processing the NF-kappa B1 precursor protein and the activation of NF-kappa B

3 June 2018

1 reference

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Wavelength mutations and posttranslational autoxidation of green fluorescent protein

3 June 2018

1 reference

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Pore loops of the AAA ClpX machine grip substrates to drive translocation and unfolding

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184388

Deconstructing green fluorescent protein

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184388

Diverse pore loops of the AAA ClpX machine mediate unassisted and adaptor-dependent recognition of ssrA-tagged substrates.

26 November 2018

1 reference

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Protein unfolding by a AAA protease is dependent on ATP-hydrolysis rates and substrate energy landscapes.

26 November 2018

1 reference

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Proton relay reaction in green fluorescent protein (GFP): Polarization-resolved ultrafast vibrational spectroscopy of isotopically edited GFP.

26 November 2018

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A conserved processing mechanism regulates the activity of transcription factors Cubitus interruptus and NF-κB

26 November 2018

1 reference

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Protein tagging and detection with engineered self-assembling fragments of green fluorescent protein

26 November 2018

1 reference

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Kinetics of protein substrate degradation by HslUV.

26 November 2018

1 reference

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Effects of local protein stability and the geometric position of the substrate degradation tag on the efficiency of ClpXP denaturation and degradation

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184388

Bivalent tethering of SspB to ClpXP is required for efficient substrate delivery: a protein-design study.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184388

Linkage between ATP consumption and mechanical unfolding during the protein processing reactions of an AAA degradation machine.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184388

ATP-dependent proteases degrade their substrates by processively unraveling them from the degradation signal

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184388

Dynamics of substrate denaturation and translocation by the ClpXP degradation machine

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184388

ClpX, an alternative subunit for the ATP-dependent Clp protease of Escherichia coli. Sequence and in vivo activities.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184388

Isolation and characterization of ClpX, a new ATP-dependent specificity component of the Clp protease of Escherichia coli.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184388

Coupled assay of Na ,K -ATPase activity

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21821046

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.JMB.2011.07.041

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21821046 AND SRC:MED&resulttype=core&format=json

9 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21821046 AND SRC:MED&resulttype=core&format=json

9 February 2020

PubMed publication ID

21821046

1 reference