NMR studies of the dynamics of high-spin nitrophorins: comparative studies of NP4 and NP2 at close to physiological pH (Q30153274)

2 November 2017

NMR studies of the dynamics of high-spin nitrophorins: comparative studies of NP4 and NP2 at close to physiological pH (English)

1 reference

2 November 2017

Dhanasekaran Muthu

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25486224 AND SRC:MED&resulttype=core&format=json

11 June 2020

Fei Yang

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25486224 AND SRC:MED&resulttype=core&format=json

11 June 2020

language of work or name

English

0 references

publication date

24 December 2014

1 reference

2 November 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25486224 AND SRC:MED&resulttype=core&format=json

11 June 2020

volume

54

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25486224 AND SRC:MED&resulttype=core&format=json

11 June 2020

issue

2

1 reference

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11 June 2020

page(s)

221-239

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25486224 AND SRC:MED&resulttype=core&format=json

NMR investigations of nitrophorin 2 belt side chain effects on heme orientation and seating of native N-terminus NP2 and NP2(D1A).

11 June 2020

cites work

1 reference

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NMR studies of the dynamics of nitrophorin 2 bound to nitric oxide.

3 June 2018

1 reference

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pH-dependent picosecond structural dynamics in the distal pocket of nitrophorin 4 investigated by 2D IR spectroscopy

3 June 2018

1 reference

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Protein backbone and sidechain torsion angles predicted from NMR chemical shifts using artificial neural networks

3 June 2018

1 reference

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Electron spin density on the axial His ligand of high-spin and low-spin nitrophorin 2 probed by heteronuclear NMR spectroscopy

3 June 2018

1 reference

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Native N-terminus nitrophorin 2 from the kissing bug: similarities to and differences from NP2(D1A).

3 June 2018

1 reference

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Heterogeneous kinetics of the carbon monoxide association and dissociation reaction to nitrophorin 4 and 7 coincide with structural heterogeneity of the gate-loop

3 June 2018

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Automated NMR relaxation dispersion data analysis using NESSY

3 June 2018

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A practical guide to protein dynamics from 15N spin relaxation in solution

3 June 2018

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relaxGUI: a new software for fast and simple NMR relaxation data analysis and calculation of ps-ns and μs motion of proteins

3 June 2018

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An introduction to NMR-based approaches for measuring protein dynamics

3 June 2018

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A Transient and Low-Populated Protein-Folding Intermediate at Atomic Resolution

3 June 2018

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Ultrafast dynamics of diatomic ligand binding to nitrophorin 4.

3 June 2018

1 reference

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NMR Structure and Dynamics of the Engineered Fluorescein-Binding Lipocalin FluA Reveal Rigidification of β-Barrel and Variable Loops upon Enthalpy-Driven Ligand Binding

3 June 2018

1 reference

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TALOS : a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts

3 June 2018

1 reference

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PINE-SPARKY: graphical interface for evaluating automated probabilistic peak assignments in protein NMR spectroscopy

3 June 2018

1 reference

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Probabilistic interaction network of evidence algorithm and its application to complete labeling of peak lists from protein NMR spectroscopy

3 June 2018

1 reference

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Low-frequency mode activity of heme: femtosecond coherence spectroscopy of iron porphine halides and nitrophorin

3 June 2018

1 reference

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Probing invisible, low-populated States of protein molecules by relaxation dispersion NMR spectroscopy: an application to protein folding

3 June 2018

1 reference

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Optimisation of NMR dynamic models II. A new methodology for the dual optimisation of the model-free parameters and the Brownian rotational diffusion tensor

3 June 2018

1 reference

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Optimisation of NMR dynamic models I. Minimisation algorithms and their performance within the model-free and Brownian rotational diffusion spaces

3 June 2018

1 reference

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Apo-nitrophorin 4 at atomic resolution

3 June 2018

1 reference

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Effect of the N-terminus on heme cavity structure, ligand equilibrium, rate constants, and reduction potentials of nitrophorin 2 from Rhodnius prolixus

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4303294

Soluble guanylate cyclase

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4303294

The dynamic energy landscape of dihydrofolate reductase catalysis

3 June 2018

1 reference

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NMR dynamic studies suggest that allosteric activation regulates ligand binding in chicken liver bile acid-binding protein

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4303294

Intrinsic dynamics of an enzyme underlies catalysis

3 June 2018

1 reference

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A simple method to predict protein flexibility using secondary chemical shifts

3 June 2018

1 reference

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Nitric oxide interaction with insect nitrophorins and thoughts on the electron configuration of the {FeNO}6 complex

3 June 2018

1 reference

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UCSF Chimera--a visualization system for exploratory research and analysis

3 June 2018

1 reference

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Axial ligand complexes of the Rhodnius nitrophorins: reduction potentials, binding constants, EPR spectra, and structures of the 4-iodopyrazole and imidazole complexes of NP4

3 June 2018

1 reference

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FAST-Modelfree: a program for rapid automated analysis of solution NMR spin-relaxation data

3 June 2018

1 reference

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Protein dynamics from solution NMR: theory and applications

3 June 2018

1 reference

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Slow dynamics in folded and unfolded states of an SH3 domain

3 June 2018

1 reference

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Ligand-induced heme ruffling and bent no geometry in ultra-high-resolution structures of nitrophorin 4

3 June 2018

1 reference

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Flexibility and ligand exchange in a buried cavity mutant of T4 lysozyme studied by multinuclear NMR.

3 June 2018

1 reference

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Kinetics and equilibria in ligand binding by nitrophorins 1-4: evidence for stabilization of a nitric oxide-ferriheme complex through a ligand-induced conformational trap

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4303294

The crystal structure of nitrophorin 2. A trifunctional antihemostatic protein from the saliva of Rhodnius prolixus

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4303294

Nitric oxide binding to nitrophorin 4 induces complete distal pocket burial

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4303294

Structural changes accompanying pH-induced dissociation of the beta-lactoglobulin dimer

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4303294

Solution structure and dynamics of bovine β-lactoglobulin A

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4303294

Protein backbone angle restraints from searching a database for chemical shift and sequence homology

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4303294

12-Bromododecanoic acid binds inside the calyx of bovine beta-lactoglobulin

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4303294

The crystal structure of nitrophorin 4 at 1.5 A resolution: transport of nitric oxide by a lipocalin-based heme protein

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4303294

Recommendations for the presentation of NMR structures of proteins and nucleic acids--IUPAC-IUBMB-IUPAB Inter-Union Task Group on the standardization of data bases of protein and nucleic acid structures determined by NMR spectroscopy

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4303294

Crystal structures of a nitric oxide transport protein from a blood-sucking insect

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4303294

Bovine beta-lactoglobulin at 1.8 A resolution--still an enigmatic lipocalin

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4303294

Ligand binding alters the backbone mobility of intestinal fatty acid-binding protein as monitored by 15N NMR relaxation and 1H exchange

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4303294

cDNA cloning, expression and characterization of nitric-oxide synthase from the salivary glands of the blood-sucking insect Rhodnius prolixus

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4303294

NMRPipe: a multidimensional spectral processing system based on UNIX pipes

3 June 2018

1 reference

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Backbone dynamics of Escherichia coli ribonuclease HI: correlations with structure and function in an active enzyme

3 June 2018

1 reference

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Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4303294

Beta-lactoglobulin binds retinol and protoporphyrin IX at two different binding sites

3 June 2018

1 reference

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Analysis of the backbone dynamics of interleukin-1 beta using two-dimensional inverse detected heteronuclear 15N-1H NMR spectroscopy

3 June 2018

1 reference

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Internal motions and exchange processes in human ileal bile acid binding protein as studied by backbone (15)N nuclear magnetic resonance spectroscopy.

3 June 2018

1 reference

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Divided-evolution-based pulse scheme for quantifying exchange processes in proteins: powerful complement to relaxation dispersion experiments

26 November 2018

1 reference

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Assignment of the ferriheme resonances of high- and low-spin forms of the symmetrical hemin-reconstituted nitrophorins 1-4 by 1H and 13C NMR spectroscopy: the dynamics of heme ruffling deformations

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4303294

Ultrahigh resolution structures of nitrophorin 4: heme distortion in ferrous CO and NO complexes.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4303294

Protein functional cycle viewed at atomic resolution: conformational change and mobility in nitrophorin 4 as a function of pH and NO binding

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4303294

Structural dynamics controls nitric oxide affinity in nitrophorin 4.

26 November 2018

1 reference

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Role of binding site loops in controlling nitric oxide release: structure and kinetics of mutant forms of nitrophorin 4.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4303294

Improved labeling strategy for 13C relaxation measurements of methyl groups in proteins

26 November 2018

1 reference

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Nitric oxide binding and crystallization of recombinant nitrophorin I, a nitric oxide transport protein from the blood-sucking bug Rhodnius prolixus.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4303294

Reversible binding of nitric oxide by a salivary heme protein from a bloodsucking insect.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4303294

Long-range motional restrictions in a multidomain zinc-finger protein from anisotropic tumbling.

26 November 2018

1 reference

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Purification, partial characterization, and cloning of nitric oxide-carrying heme proteins (nitrophorins) from salivary glands of the blood-sucking insect Rhodnius prolixus

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4303294

A Salivary Nitrophorin (Nitric-Oxide-Carrying Hemoprotein) in the Bedbug Cimex Lectularius

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4303294

Identification of slow motions in the reduced recombinant high-potential iron sulfur protein I (HiPIP I) from Ectothiorhodospira halophila via 15N rotating-frame NMR relaxation measurements

26 November 2018

1 reference

12 December 2020

NMR characterization of the dynamics of biomacromolecules

1 reference

12 December 2020

Fatty acids and retinoids bind independently and simultaneously to beta-lactoglobulin

1 reference

12 December 2020

Probing the Backbone Dynamics of Oxidized and Reduced Rat Microsomal Cytochromeb5via15N Rotating Frame NMR Relaxation Measurements: Biological Implications†

1 reference

12 December 2020

Identifiers

DOI

10.1021/BI501305A

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25486224 AND SRC:MED&resulttype=core&format=json

11 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25486224 AND SRC:MED&resulttype=core&format=json

11 June 2020

PubMed publication ID

25486224

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25486224 AND SRC:MED&resulttype=core&format=json