Substrate, product, and cofactor: The extraordinarily flexible relationship between the CDE superfamily and heme (Q30152968)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778630 AND SRC:MED&resulttype=core&format=json

3 March 2020

review article

1 reference

title

Substrate, product, and cofactor: The extraordinarily flexible relationship between the CDE superfamily and heme (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778630 AND SRC:MED&resulttype=core&format=json

3 March 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778630 AND SRC:MED&resulttype=core&format=json

3 March 2020

author name string

Jennifer L DuBois

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778630 AND SRC:MED&resulttype=core&format=json

3 March 2020

language of work or name

English

0 references

publication date

14 March 2015

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778630 AND SRC:MED&resulttype=core&format=json

3 March 2020

number of pages

15

1 reference

Archives of Biochemistry and Biophysics

inferred from page(s)

published in

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778630 AND SRC:MED&resulttype=core&format=json

3 March 2020

volume

574

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778630 AND SRC:MED&resulttype=core&format=json

3 March 2020

page(s)

3-17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778630 AND SRC:MED&resulttype=core&format=json

Noncanonical coproporphyrin-dependent bacterial heme biosynthesis pathway that does not use protoporphyrin

3 March 2020

cites work

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3 June 2018

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The toolbox of Auricularia auricula-judae dye-decolorizing peroxidase - Identification of three new potential substrate-interaction sites

3 June 2018

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Catalytic surface radical in dye-decolorizing peroxidase: a computational, spectroscopic and site-directed mutagenesis study.

3 June 2018

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A dimeric chlorite dismutase exhibits O2-generating activity and acts as a chlorite antioxidant in Klebsiella pneumoniae MGH 78578.

3 June 2018

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Crystallographic and Spectroscopic Insights into Heme Degradation by Mycobacterium tuberculosis MhuD

3 June 2018

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The alternative route to heme in the methanogenic archaeon Methanosarcina barkeri

3 June 2018

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Manipulating Conserved Heme Cavity Residues of Chlorite Dismutase: Effect on Structure, Redox Chemistry, and Reactivity

3 June 2018

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SCOPe: Structural Classification of Proteins--extended, integrating SCOP and ASTRAL data and classification of new structures

3 June 2018

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Heme oxygenation and the widening paradigm of heme degradation

3 June 2018

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Peroxidase-type reactions suggest a heterolytic/nucleophilic O-O joining mechanism in the heme-dependent chlorite dismutase

3 June 2018

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Structure and evolution of chlorate reduction composite transposons

3 June 2018

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The chlorite dismutase (HemQ) from Staphylococcus aureus has a redox-sensitive heme and is associated with the small colony variant phenotype

3 June 2018

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Heme degradation by Staphylococcus aureus IsdG and IsdI liberates formaldehyde rather than carbon monoxide.

3 June 2018

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Staphylococcus aureus FepA and FepB proteins drive heme iron utilization in Escherichia coli

3 June 2018

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A new way to degrade heme: the Mycobacterium tuberculosis enzyme MhuD catalyzes heme degradation without generating CO.

3 June 2018

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Crystal structure of aldoxime dehydratase and its catalytic mechanism involved in carbon-nitrogen triple-bond synthesis

3 June 2018

1 reference

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X-ray crystallographic and molecular docking studies on a unique chloromuconolactone dehalogenase from Rhodococcus opacus 1CP

3 June 2018

1 reference

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Improved Manganese-Oxidizing Activity of DypB, a Peroxidase from a Lignolytic Bacterium

3 June 2018

1 reference

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Understanding the roles of strictly conserved tryptophan residues in O2 producing chlorite dismutases

3 June 2018

1 reference

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First Crystal Structure of a Fungal High-redox Potential Dye-decolorizing Peroxidase: SUBSTRATE INTERACTION SITES AND LONG-RANGE ELECTRON TRANSFER

3 June 2018

1 reference

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Inactivation of the Heme Degrading Enzyme IsdI by an Active Site Substitution That Diminishes Heme Ruffling

3 June 2018

1 reference

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Impact of subunit and oligomeric structure on the thermal and conformational stability of chlorite dismutases

3 June 2018

1 reference

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Understanding How the Distal Environment Directs Reactivity in Chlorite Dismutase: Spectroscopy and Reactivity of Arg183 Mutants

3 June 2018

1 reference

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Distal Heme Pocket Residues of B-type Dye-decolorizing Peroxidase: ARGININE BUT NOT ASPARTATE IS ESSENTIAL FOR PEROXIDASE ACTIVITY

3 June 2018

1 reference

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The Escherichia coli Protein YfeX Functions as a Porphyrinogen Oxidase, Not a Heme Dechelatase

3 June 2018

1 reference

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Molecular hijacking of siroheme for the synthesis of heme and d1 heme

3 June 2018

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Substrate Pathways and Mechanisms of Inhibition in the Sulfur Oxygenase Reductase of Acidianus Ambivalens

3 June 2018

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The flexible loop of Staphylococcus aureus IsdG is required for its degradation in the absence of heme

3 June 2018

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Molecular Mechanisms of Staphylococcus aureus Iron Acquisition

3 June 2018

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The catalytic mechanism of dye-decolorizing peroxidase DyP may require the swinging movement of an aspartic acid residue

3 June 2018

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Characterization of dye-decolorizing peroxidases from Rhodococcus jostii RHA1

3 June 2018

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Unexpected Diversity of Chlorite Dismutases: a Catalytically Efficient Dimeric Enzyme from Nitrobacter winogradskyi

3 June 2018

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Chlorite dismutases, DyPs, and EfeB: 3 microbial heme enzyme families comprise the CDE structural superfamily

3 June 2018

1 reference

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Crystal Structure and Biochemical Features of EfeB/YcdB from Escherichia coli O157

3 June 2018

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Cytoscape 2.8: new features for data integration and network visualization

3 June 2018

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Natural chlorate in the environment: application of a new IC-ESI/MS/MS method with a Cl¹⁸O₃-internal standard

3 June 2018

1 reference

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Structural and functional characterisation of the chlorite dismutase from the nitrite-oxidizing bacterium "Candidatus Nitrospira defluvii": identification of a catalytically important amino acid residue

3 June 2018

1 reference

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Discovery and Characterization of HemQ: an essential heme biosynthetic pathway component

3 June 2018

1 reference

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Structural features promoting dioxygen production by Dechloromonas aromatica chlorite dismutase

3 June 2018

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Dioxygen activation for the self-degradation of heme: reaction mechanism and regulation of heme oxygenase

3 June 2018

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How active-site protonation state influences the reactivity and ligation of the heme in chlorite dismutase

3 June 2018

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The IsdG-family of haem oxygenases degrades haem to a novel chromophore

3 June 2018

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3 June 2018

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Crystal structure of the cofactor-independent monooxygenase SnoaB from Streptomyces nogalater: implications for the reaction mechanism

3 June 2018

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Unusual Diheme Conformation of the Heme-Degrading Protein from Mycobacterium tuberculosis

3 June 2018

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X-ray Crystal Structure of Michaelis Complex of Aldoxime Dehydratase

3 June 2018

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Bacteria capture iron from heme by keeping tetrapyrrol skeleton intact

3 June 2018

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Crystal structure of chlorite dismutase, a detoxifying enzyme producing molecular oxygen

3 June 2018

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3 June 2018

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Ruffling of Metalloporphyrins Bound to IsdG and IsdI, Two Heme-degrading Enzymes in Staphylococcus aureus

3 June 2018

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Staphylococcus aureus haem oxygenases are differentially regulated by iron and haem.

3 June 2018

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Chemical and steady-state kinetic analyses of a heterologously expressed heme dependent chlorite dismutase

3 June 2018

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DyP, a unique dye-decolorizing peroxidase, represents a novel heme peroxidase family: ASP171 replaces the distal histidine of classical peroxidases

3 June 2018

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Identification and structural characterization of heme binding in a novel dye-decolorizing peroxidase, TyrA

3 June 2018

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Crystal structures of two novel dye-decolorizing peroxidases reveal a beta-barrel fold with a conserved heme-binding motif

3 June 2018

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EfeUOB (YcdNOB) is a tripartite, acid-induced and CpxAR-regulated, low-pH Fe2 transporter that is cryptic in Escherichia coli K-12 but functional in E. coli O157:H7.

3 June 2018

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Characterization of ferric and ferrous iron transport systems in Vibrio cholerae

3 June 2018

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Complete decolorization of the anthraquinone dye Reactive blue 5 by the concerted action of two peroxidases from Thanatephorus cucumeris Dec 1.

3 June 2018

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The impact of structural genomics: expectations and outcomes

3 June 2018

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Active site structure and catalytic mechanisms of human peroxidases

3 June 2018

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cDNA cloning and genetic analysis of a novel decolorizing enzyme, peroxidase gene dyp from Geotrichum candidum Dec 1.

3 June 2018

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Structure-based functional identification of a novel heme-binding protein from Thermus thermophilus HB8.

3 June 2018

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Metabolic primers for detection of (Per)chlorate-reducing bacteria in the environment and phylogenetic analysis of cld gene sequences.

3 June 2018

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Microbial perchlorate reduction: rocket-fueled metabolism

3 June 2018

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IsdG and IsdI, heme-degrading enzymes in the cytoplasm of Staphylococcus aureus

3 June 2018

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A gene cluster for chlorate metabolism in Ideonella dechloratans

3 June 2018

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The structure of ActVA-Orf6, a novel type of monooxygenase involved in actinorhodin biosynthesis.

3 June 2018

1 reference

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Divergent evolution of enzymatic function: mechanistically diverse superfamilies and functionally distinct suprafamilies

3 June 2018

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Efficient heterologous expression in Aspergillus oryzae of a unique dye-decolorizing peroxidase, DyP, of Geotrichum candidum Dec 1.

3 June 2018

1 reference

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Ubiquity and diversity of dissimilatory (per)chlorate-reducing bacteria

3 June 2018

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Purification and characterization of a novel peroxidase from Geotrichum candidum dec 1 involved in decolorization of dyes

3 June 2018

1 reference

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Heme oxygenase-1, intermediates in verdoheme formation and the requirement for reduction equivalents.

3 June 2018

1 reference

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Histidine 52 is a critical residue for rapid formation of cytochrome c peroxidase compound I

3 June 2018

1 reference

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Methine-bridge specificity of the coupled oxidation of myoglobin and haemoglobin with ascorbate

3 June 2018

1 reference

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Coupled oxidation of myoglobin with ascorbate as a model of haem brakdown in vivo

3 June 2018

1 reference

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Nitrate respiration in relation to facultative metabolism in enterobacteria

3 June 2018

1 reference

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Crystal structure of muconolactone isomerase at 3.3 A resolution

3 June 2018

1 reference

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The evolution of alpha/beta barrel enzymes

3 June 2018

1 reference

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Lignin-degrading peroxidases in Polyporales: an evolutionary survey based on 10 sequenced genomes

3 June 2018

1 reference

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The Bacillus subtilis EfeUOB transporter is essential for high-affinity acquisition of ferrous and ferric iron

26 November 2018

1 reference

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Identification of DypB from Rhodococcus jostii RHA1 as a lignin peroxidase.

26 November 2018

1 reference

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Perchlorate Formation by Ozone Oxidation of Aqueous Chlorine/Oxy-Chlorine Species: Role of ClxOyRadicals

26 November 2018

1 reference

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EfeO-cupredoxins: major new members of the cupredoxin superfamily with roles in bacterial iron transport.

26 November 2018

1 reference

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Environmental genomics reveals a functional chlorite dismutase in the nitrite-oxidizing bacterium 'Candidatus Nitrospira defluvii'.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4414885

Crystal structures of dye-decolorizing peroxidase with ascorbic acid and 2,6-dimethoxyphenol

26 November 2018

1 reference

12 December 2020

Coupled oxidation of heme by myoglobin is mediated by exogenous peroxide

1 reference

12 December 2020

Aldoxime dehydratase: probing the heme environment involved in the synthesis of the carbon-nitrogen triple bond

1 reference

12 December 2020

Characterisation of Dyp-type peroxidases from Pseudomonas fluorescens Pf-5: Oxidation of Mn(II) and polymeric lignin by Dyp1B

1 reference

12 December 2020

Structural implication of the heme-linked ionization of horseradish peroxidase probed by the Fe-histidine stretching Raman line

1 reference

12 December 2020

YcdB from Escherichia coli reveals a novel class of Tat-dependently translocated hemoproteins

1 reference

12 December 2020

10.1016/J.ABB.2015.03.004

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778630 AND SRC:MED&resulttype=core&format=json

3 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778630 AND SRC:MED&resulttype=core&format=json

3 March 2020

PubMed publication ID

25778630

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778630 AND SRC:MED&resulttype=core&format=json