Dynamics and diversity in autophagy mechanisms: lessons from yeast (Q29620685)

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29 January 2020

review article

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title

Dynamics and diversity in autophagy mechanisms: lessons from yeast (English)

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30 April 2017

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29 January 2020

Yoshiaki Kamada

series ordinal

3

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29 January 2020

author name string

Kuninori Suzuki

series ordinal

2

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29 January 2020

Yoshinori Ohsumi

series ordinal

4

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29 January 2020

language of work or name

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30 April 2017

publication date

3 June 2009

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Nature Reviews Molecular Cell Biology

29 January 2020

published in

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29 January 2020

volume

10

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issue

7

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29 January 2020

page(s)

458-467

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Participation of lysosomes in cellular autophagy induced in rat liver by glucagon

29 January 2020

cites work

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Two distinct Vps34 phosphatidylinositol 3-kinase complexes function in autophagy and carboxypeptidase Y sorting in Saccharomyces cerevisiae

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Apg9p/Cvt7p is an integral membrane protein required for transport vesicle formation in the Cvt and autophagy pathways

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Autophagy and the cytoplasm to vacuole targeting pathway both require Aut10p

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Formation process of autophagosome is traced with Apg8/Aut7p in yeast

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The pre-autophagosomal structure organized by concerted functions of APG genes is essential for autophagosome formation

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Hierarchy of Atg proteins in pre-autophagosomal structure organization

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Tor, a phosphatidylinositol kinase homologue, controls autophagy in yeast

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The Ras/cAMP-dependent protein kinase signaling pathway regulates an early step of the autophagy process in Saccharomyces cerevisiae

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Apg1p, a novel protein kinase required for the autophagic process in Saccharomyces cerevisiae

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Analyses of APG13 gene involved in autophagy in yeast, Saccharomyces cerevisiae

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Atg17 functions in cooperation with Atg1 and Atg13 in yeast autophagy

1 May 2017

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Characterization of a novel autophagy-specific gene, ATG29.

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Cis1/Atg31 is required for autophagosome formation in Saccharomyces cerevisiae

1 May 2017

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Organization of the pre-autophagosomal structure responsible for autophagosome formation

1 May 2017

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Atg17 regulates the magnitude of the autophagic response

1 May 2017

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FIP200, a ULK-interacting protein, is required for autophagosome formation in mammalian cells

1 May 2017

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Kinase-inactivated ULK proteins inhibit autophagy via their conserved C-terminal domains using an Atg13-independent mechanism

1 May 2017

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Nutrient-dependent mTORC1 association with the ULK1-Atg13-FIP200 complex required for autophagy

1 May 2017

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ULK-Atg13-FIP200 complexes mediate mTOR signaling to the autophagy machinery

1 May 2017

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ULK1.ATG13.FIP200 complex mediates mTOR signaling and is essential for autophagy

1 May 2017

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Phosphatidylinositol 3-kinase encoded by yeast VPS34 gene essential for protein sorting

1 May 2017

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Assortment of phosphatidylinositol 3-kinase complexes--Atg14p directs association of complex I to the pre-autophagosomal structure in Saccharomyces cerevisiae

1 May 2017

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Svp1p defines a family of phosphatidylinositol 3,5-bisphosphate effectors

1 May 2017

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Atg21 is a phosphoinositide binding protein required for efficient lipidation and localization of Atg8 during uptake of aminopeptidase I by selective autophagy

1 May 2017

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Atg18 regulates organelle morphology and Fab1 kinase activity independent of its membrane recruitment by phosphatidylinositol 3,5-bisphosphate

1 May 2017

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Starvation and ULK1-dependent cycling of mammalian Atg9 between the TGN and endosomes

1 May 2017

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Autophagosome formation: core machinery and adaptations

1 May 2017

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Self-interaction is critical for Atg9 transport and function at the phagophore assembly site during autophagy

1 May 2017

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Dissection of autophagosome formation using Apg5-deficient mouse embryonic stem cells

1 May 2017

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The reversible modification regulates the membrane-binding state of Apg8/Aut7 essential for autophagy and the cytoplasm to vacuole targeting pathway

1 May 2017

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Membrane recruitment of Aut7p in the autophagy and cytoplasm to vacuole targeting pathways requires Aut1p, Aut2p, and the autophagy conjugation complex

1 May 2017

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LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing

1 May 2017

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In vivo and in vitro reconstitution of Atg8 conjugation essential for autophagy

1 May 2017

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Atg8 controls phagophore expansion during autophagosome formation

1 May 2017

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Apg16p is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway

1 May 2017

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Formation of the approximately 350-kDa Apg12-Apg5.Apg16 multimeric complex, mediated by Apg16 oligomerization, is essential for autophagy in yeast

1 May 2017

1 reference

The Atg12-Atg5 conjugate has a novel E3-like activity for protein lipidation in autophagy

1 May 2017

1 reference

The Atg16L complex specifies the site of LC3 lipidation for membrane biogenesis in autophagy

1 May 2017

1 reference

Cvt19 is a receptor for the cytoplasm-to-vacuole targeting pathway.

1 May 2017

1 reference

Mechanism of cargo selection in the cytoplasm to vacuole targeting pathway

1 May 2017

1 reference

Structural basis of target recognition by Atg8/LC3 during selective autophagy

1 May 2017

1 reference

p62/SQSTM1 forms protein aggregates degraded by autophagy and has a protective effect on huntingtin-induced cell death

1 May 2017

1 reference

p62/SQSTM1 binds directly to Atg8/LC3 to facilitate degradation of ubiquitinated protein aggregates by autophagy

1 May 2017

1 reference

Homeostatic levels of p62 control cytoplasmic inclusion body formation in autophagy-deficient mice

1 May 2017

1 reference

The N-terminus and Phe52 residue of LC3 recruit p62/SQSTM1 into autophagosomes

1 May 2017

1 reference

Structural basis for sorting mechanism of p62 in selective autophagy

1 May 2017

1 reference

Cooperative binding of the cytoplasm to vacuole targeting pathway proteins, Cvt13 and Cvt20, to phosphatidylinositol 3-phosphate at the pre-autophagosomal structure is required for selective autophagy

1 May 2017

1 reference

Cvt9/Gsa9 functions in sequestering selective cytosolic cargo destined for the vacuole

1 May 2017

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Cargo proteins facilitate the formation of transport vesicles in the cytoplasm to vacuole targeting pathway

1 May 2017

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Atg11 links cargo to the vesicle-forming machinery in the cytoplasm to vacuole targeting pathway

1 May 2017

1 reference

An Arabidopsis homolog of yeast ATG6/VPS30 is essential for pollen germination

1 May 2017

1 reference

Inhibition of mTOR induces autophagy and reduces toxicity of polyglutamine expansions in fly and mouse models of Huntington disease

1 May 2017

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Lap3 is a selective target of autophagy in yeast, Saccharomyces cerevisiae

1 May 2017

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Mature ribosomes are selectively degraded upon starvation by an autophagy pathway requiring the Ubp3p/Bre5p ubiquitin protease

1 May 2017

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Autophagy in yeast demonstrated with proteinase-deficient mutants and conditions for its induction

1 May 2017

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Ultrastructural analysis of the autophagic process in yeast: detection of autophagosomes and their characterization

31 March 2020

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Analysis of the membrane structures involved in autophagy in yeast by freeze-replica method

31 March 2020

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Genetic and phenotypic overlap between autophagy and the cytoplasm to vacuole protein targeting pathway

31 March 2020

1 reference

Isolation of autophagocytosis mutants of Saccharomyces cerevisiae

31 March 2020

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Peroxisome degradation by microautophagy in Pichia pastoris: identification of specific steps and morphological intermediates

31 March 2020

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Paz2 and 13 other PAZ gene products regulate vacuolar engulfment of peroxisomes during micropexophagy.

31 March 2020

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Isolation and characterization of mutants impaired in the selective degradation of peroxisomes in the yeast Hansenula polymorpha

31 March 2020

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A Unified Nomenclature for Yeast Autophagy-Related Genes

31 March 2020

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In vivo reconstitution of autophagy in Saccharomyces cerevisiae

31 March 2020

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Protein kinase A and Sch9 cooperatively regulate induction of autophagy in Saccharomyces cerevisiae

31 March 2020

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The Atg1 kinase complex is involved in the regulation of protein recruitment to initiate sequestering vesicle formation for nonspecific autophagy in Saccharomyces cerevisiae

31 March 2020

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Atg17 recruits Atg9 to organize the pre-autophagosomal structure

31 March 2020

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31 March 2020

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31 March 2020

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Distinct classes of phosphatidylinositol 3'-kinases are involved in signaling pathways that control macroautophagy in HT-29 cells

31 March 2020

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The Atg18-Atg2 complex is recruited to autophagic membranes via phosphatidylinositol 3-phosphate and exerts an essential function

31 March 2020

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Transport of phosphatidylinositol 3-phosphate into the vacuole via autophagic membranes in Saccharomyces cerevisiae

31 March 2020

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The Atg1-Atg13 complex regulates Atg9 and Atg23 retrieval transport from the pre-autophagosomal structure

31 March 2020

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Processing of ATG8s, ubiquitin-like proteins, and their deconjugation by ATG4s are essential for plant autophagy

31 March 2020

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31 March 2020

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An Atg4B mutant hampers the lipidation of LC3 paralogues and causes defects in autophagosome closure

31 March 2020

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The Atg8 conjugation system is indispensable for proper development of autophagic isolation membranes in mice

31 March 2020

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Mouse Apg16L, a novel WD-repeat protein, targets to the autophagic isolation membrane with the Apg12-Apg5 conjugate

31 March 2020

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Quantitative analysis of autophagy-related protein stoichiometry by fluorescence microscopy

31 March 2020

1 reference

Structure-function relationship of Atg12, a ubiquitin-like modifier essential for autophagy

31 March 2020

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In vitro reconstitution of plant Atg8 and Atg12 conjugation systems essential for autophagy

31 March 2020

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Phosphatidylserine in addition to phosphatidylethanolamine is an in vitro target of the mammalian Atg8 modifiers, LC3, GABARAP, and GATE-16

31 March 2020

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Physiological pH and acidic phospholipids contribute to substrate specificity in lipidation of Atg8.

31 March 2020

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Transport of a large oligomeric protein by the cytoplasm to vacuole protein targeting pathway

31 March 2020

1 reference

Atg19 mediates a dual interaction cargo sorting mechanism in selective autophagy

31 March 2020

1 reference

PpAtg30 tags peroxisomes for turnover by selective autophagy.

31 March 2020

1 reference

Mitophagy in yeast occurs through a selective mechanism

31 March 2020

1 reference

Dictyostelium macroautophagy mutants vary in the severity of their developmental defects.

31 March 2020

1 reference

Ald6p is a preferred target for autophagy in yeast, Saccharomyces cerevisiae

31 March 2020

1 reference

Atg8, a ubiquitin-like protein required for autophagosome formation, mediates membrane tethering and hemifusion

31 March 2020

1 reference

https://pubmed.ncbi.nlm.nih.gov/19491929

12 December 2020

inferred from PubMed ID database lookup

Two distinct pathways for targeting proteins from the cytoplasm to the vacuole/lysosome

1 reference

https://pubmed.ncbi.nlm.nih.gov/19491929

12 December 2020

inferred from PubMed ID database lookup

Glucose-induced microautophagy in Pichia pastoris requires the alpha-subunit of phosphofructokinase.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19491929

12 December 2020

inferred from PubMed ID database lookup

Identifiers

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30 April 2017

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29 January 2020

1005747534

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30 April 2017

Consolidated OpenCitations Corpus – April 2017