DNA methylation: roles in mammalian development (Q29616796)

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=23400093

30 April 2017

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Smith ZD

1

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30 April 2017

Meissner A

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2

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=23400093

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=23400093

30 April 2017

language of work or name

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30 April 2017

publication date

March 2013

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30 April 2017

published in

Nature Reviews Genetics

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30 April 2017

volume

14

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30 April 2017

issue

3

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30 April 2017

page(s)

204-20

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Epigenetic reprogramming in plant and animal development

30 April 2017

cites work

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Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a.

31 March 2020

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Genomic distribution and inter-sample variation of non-CpG methylation across human cell types

31 March 2020

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DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development

31 March 2020

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Targeted mutation of the DNA methyltransferase gene results in embryonic lethality

31 March 2020

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CpG islands and the regulation of transcription

31 March 2020

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Chemistry. How are alkynes scrambled?

31 March 2020

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X inactivation, differentiation, and DNA methylation

31 March 2020

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Principles and challenges of genomewide DNA methylation analysis

31 March 2020

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A unique regulatory phase of DNA methylation in the early mammalian embryo

31 March 2020

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Orphan CpG islands identify numerous conserved promoters in the mammalian genome

31 March 2020

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Sp1 sites in the mouse aprt gene promoter are required to prevent methylation of the CpG island

31 March 2020

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Sp1 elements protect a CpG island from de novo methylation

31 March 2020

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Identification of genetic elements that autonomously determine DNA methylation states.

31 March 2020

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DNA-binding factors shape the mouse methylome at distal regulatory regions

31 March 2020

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CpG islands influence chromatin structure via the CpG-binding protein Cfp1.

31 March 2020

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Cfp1 integrates both CpG content and gene activity for accurate H3K4me3 deposition in embryonic stem cells

31 March 2020

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MLL protects CpG clusters from methylation within the Hoxa9 gene, maintaining transcript expression.

31 March 2020

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Structural basis for recognition of H3K4 methylation status by the DNA methyltransferase 3A ATRX-DNMT3-DNMT3L domain

31 March 2020

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DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA

31 March 2020

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Changes in H2A.Z occupancy and DNA methylation during B-cell lymphomagenesis

31 March 2020

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Gene reactivation by 5-aza-2'-deoxycytidine-induced demethylation requires SRCAP-mediated H2A.Z insertion to establish nucleosome depleted regions

31 March 2020

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Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk

31 March 2020

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Nucleosome-interacting proteins regulated by DNA and histone methylation

31 March 2020

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Antagonism between DNA and H3K27 methylation at the imprinted Rasgrf1 locus

31 March 2020

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Functions of DNA methylation: islands, start sites, gene bodies and beyond

31 March 2020

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R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters

31 March 2020

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On the enzymatic properties of Dnmt1: specificity, processivity, mechanism of linear diffusion and allosteric regulation of the enzyme

31 March 2020

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Structure of DNMT1-DNA Complex Reveals a Role for Autoinhibition in Maintenance DNA Methylation

31 March 2020

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Characterization of a negative retinoic acid response element in the murine Oct4 promoter

31 March 2020

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Lsh, a member of the SNF2 family, is required for genome-wide methylation

31 March 2020

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Lsh is involved in de novo methylation of DNA

31 March 2020

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LSH cooperates with DNA methyltransferases to repress transcription

31 March 2020

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LSH and G9a/GLP complex are required for developmentally programmed DNA methylation

31 March 2020

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De novo DNA methylation promoted by G9a prevents reprogramming of embryonically silenced genes

31 March 2020

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DNA methylation in ES cells requires the lysine methyltransferase G9a but not its catalytic activity

31 March 2020

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Regulated recruitment of HP1 to a euchromatic gene induces mitotically heritable, epigenetic gene silencing: a mammalian cell culture model of gene variegation

31 March 2020

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Suv39h-mediated histone H3 lysine 9 methylation directs DNA methylation to major satellite repeats at pericentric heterochromatin

31 March 2020

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Chromosome instability and immunodeficiency syndrome caused by mutations in a DNA methyltransferase gene

31 March 2020

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The PWWP domain of Dnmt3a and Dnmt3b is required for directing DNA methylation to the major satellite repeats at pericentric heterochromatin

31 March 2020

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DNMT3B interacts with constitutive centromere protein CENP-C to modulate DNA methylation and the histone code at centromeric regions

31 March 2020

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CENP-B controls centromere formation depending on the chromatin context

31 March 2020

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Initial sequencing and comparative analysis of the mouse genome

31 March 2020

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Cooperativity between DNA methyltransferases in the maintenance methylation of repetitive elements

31 March 2020

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Embryonic stem cells use ZFP809 to silence retroviral DNAs

31 March 2020

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KAP1 controls endogenous retroviruses in embryonic stem cells

31 March 2020

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TRIM28 mediates primer binding site-targeted silencing of murine leukemia virus in embryonic cells

31 March 2020

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The Kruppel-associated box repressor domain can trigger de novo promoter methylation during mouse early embryogenesis

31 March 2020

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Proviral silencing in embryonic stem cells requires the histone methyltransferase ESET.

31 March 2020

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DNA methylation and SETDB1/H3K9me3 regulate predominantly distinct sets of genes, retroelements, and chimeric transcripts in mESCs

31 March 2020

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Lysine methyltransferase G9a is required for de novo DNA methylation and the establishment, but not the maintenance, of proviral silencing

31 March 2020

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Dynamic instability of genomic methylation patterns in pluripotent stem cells

31 March 2020

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L1 retrotransposition in neurons is modulated by MeCP2

31 March 2020

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Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription

31 March 2020

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Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex

31 March 2020

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De novo methylation and expression of retroviral genomes during mouse embryogenesis.

31 March 2020

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De novo methylation, expression, and infectivity of retroviral genomes introduced into embryonal carcinoma cells

31 March 2020

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De novo DNA methylation: a germ cell perspective.

31 March 2020

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Gene-specific timing and epigenetic memory in oocyte imprinting

31 March 2020

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The H19 methylation imprint is erased and re-established differentially on the parental alleles during male germ cell development

31 March 2020

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CTCF-dependent chromatin bias constitutes transient epigenetic memory of the mother at the H19-Igf2 imprinting control region in prospermatogonia.

31 March 2020

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Histone methylation is mechanistically linked to DNA methylation at imprinting control regions in mammals

31 March 2020

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Trim28 is required for epigenetic stability during mouse oocyte to embryo transition.

31 March 2020

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A maternal-zygotic effect gene, Zfp57, maintains both maternal and paternal imprints

31 March 2020

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In embryonic stem cells, ZFP57/KAP1 recognize a methylated hexanucleotide to affect chromatin and DNA methylation of imprinting control regions

31 March 2020

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Maintenance of self-renewal ability of mouse embryonic stem cells in the absence of DNA methyltransferases Dnmt1, Dnmt3a and Dnmt3b

31 March 2020

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Establishment and maintenance of genomic methylation patterns in mouse embryonic stem cells by Dnmt3a and Dnmt3b.

31 March 2020

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Severe global DNA hypomethylation blocks differentiation and induces histone hyperacetylation in embryonic stem cells.

31 March 2020

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Germ-line passage is required for establishment of methylation and expression patterns of imprinted but not of nonimprinted genes.

31 March 2020

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Epigenetic restriction of embryonic cell lineage fate by methylation of Elf5.

31 March 2020

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Trophoblast-specific DNA methylation occurs after the segregation of the trophectoderm and inner cell mass in the mouse periimplantation embryo

31 March 2020

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In vivo control of CpG and non-CpG DNA methylation by DNA methyltransferases

31 March 2020

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Regulation of DNA methylation activity through Dnmt3L promoter methylation by Dnmt3 enzymes in embryonic development.

31 March 2020

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Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation

31 March 2020

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Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution

31 March 2020

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Embryonic stem cell potency fluctuates with endogenous retrovirus activity

31 March 2020

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G9a-mediated irreversible epigenetic inactivation of Oct-3/4 during early embryogenesis.

31 March 2020

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Targeting of de novo DNA methylation throughout the Oct-4 gene regulatory region in differentiating embryonic stem cells

31 March 2020

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OCT4 establishes and maintains nucleosome-depleted regions that provide additional layers of epigenetic regulation of its target genes

31 March 2020

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Dynamics and memory of heterochromatin in living cells.

31 March 2020

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Histone h1 depletion impairs embryonic stem cell differentiation

31 March 2020

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DNA methylation is a primary mechanism for silencing postmigratory primordial germ cell genes in both germ cell and somatic cell lineages

31 March 2020

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A role for E2F6 in the restriction of male-germ-cell-specific gene expression

31 March 2020

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Dnmt3b recruitment through E2F6 transcriptional repressor mediates germ-line gene silencing in murine somatic tissues

31 March 2020

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Targets and dynamics of promoter DNA methylation during early mouse development

31 March 2020

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Promoter DNA methylation couples genome-defence mechanisms to epigenetic reprogramming in the mouse germline

31 March 2020

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Mouse ooplasm confers context-specific reprogramming capacity

31 March 2020

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Germline DNA demethylation dynamics and imprint erasure through 5-hydroxymethylcytosine

31 March 2020

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TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity

31 March 2020

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Regulation of X-chromosome inactivation by the X-inactivation centre.

31 March 2020

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Smchd1-dependent and -independent pathways determine developmental dynamics of CpG island methylation on the inactive X chromosome.

31 March 2020

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Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartment

31 March 2020

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Cell type-specific DNA methylation at intragenic CpG islands in the immune system.

31 March 2020

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DNA methylation dynamics during in vivo differentiation of blood and skin stem cells

31 March 2020

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DNA methyltransferase 1 is essential for and uniquely regulates hematopoietic stem and progenitor cells

31 March 2020

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DNA methylation protects hematopoietic stem cell multipotency from myeloerythroid restriction.

31 March 2020

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Genome-wide DNA methylation profiles in hematopoietic stem and progenitor cells reveal overrepresentation of ETS transcription factor binding sites

31 March 2020

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Comprehensive methylome map of lineage commitment from haematopoietic progenitors

31 March 2020

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DNA methylation controls the timing of astrogliogenesis through regulation of JAK-STAT signaling.

31 March 2020

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De novo DNA methyltransferase is essential for self-renewal, but not for differentiation, in hematopoietic stem cells

31 March 2020

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Dnmt3a is essential for hematopoietic stem cell differentiation

31 March 2020

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Genome-wide promoter DNA methylation dynamics of human hematopoietic progenitor cells during differentiation and aging

31 March 2020

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A promoter DNA demethylation landscape of human hematopoietic differentiation

31 March 2020

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Leukemic IDH1 and IDH2 mutations result in a hypermethylation phenotype, disrupt TET2 function, and impair hematopoietic differentiation

31 March 2020

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Ten-Eleven-Translocation 2 (TET2) negatively regulates homeostasis and differentiation of hematopoietic stem cells in mice

31 March 2020

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Tet2 loss leads to increased hematopoietic stem cell self-renewal and myeloid transformation

31 March 2020

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TET2 inactivation results in pleiotropic hematopoietic abnormalities in mouse and is a recurrent event during human lymphomagenesis

31 March 2020

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Tet2 facilitates the derepression of myeloid target genes during CEBPα-induced transdifferentiation of pre-B cells

31 March 2020

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Active DNA demethylation in human postmitotic cells correlates with activating histone modifications, but not transcription levels

31 March 2020

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A critical role for Dnmt1 and DNA methylation in T cell development, function, and survival.

31 March 2020

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DNA methylation by DNA methyltransferase 1 is critical for effector CD8 T cell expansion.

31 March 2020

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DNA methyltransferase 1 and DNA methylation patterning contribute to germinal center B-cell differentiation

31 March 2020

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Global DNA demethylation during mouse erythropoiesis in vivo

31 March 2020

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DNA methylation is a nonredundant repressor of the Th2 effector program

31 March 2020

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Active recruitment of DNA methyltransferases regulates interleukin 4 in thymocytes and T cells

31 March 2020

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Selective, stable demethylation of the interleukin-2 gene enhances transcription by an active process

31 March 2020

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A specific CpG site demethylation in the human interleukin 2 gene promoter is an epigenetic memory

31 March 2020

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Role of conserved non-coding DNA elements in the Foxp3 gene in regulatory T-cell fate

31 March 2020

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Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells

31 March 2020

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Dynamic changes in the human methylome during differentiation

31 March 2020

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CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing

31 March 2020

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Blimp1 is a critical determinant of the germ cell lineage in mice

31 March 2020

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Blimp1 associates with Prmt5 and directs histone arginine methylation in mouse germ cells

31 March 2020

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Germ cell specification in mice.

31 March 2020

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Requirement of Oct3/4 function for germ cell specification

31 March 2020

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A molecular programme for the specification of germ cell fate in mice

31 March 2020

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Identification of PGC7, a new gene expressed specifically in preimplantation embryos and germ cells

31 March 2020

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Extensive and orderly reprogramming of genome-wide chromatin modifications associated with specification and early development of germ cells in mice

31 March 2020

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Epigenetic reprogramming in mouse primordial germ cells

31 March 2020

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Methylation dynamics of repetitive DNA elements in the mouse germ cell lineage

31 March 2020

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Resistance of IAPs to methylation reprogramming may provide a mechanism for epigenetic inheritance in the mouse.

31 March 2020

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Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency.

31 March 2020

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Global profiling of DNA methylation erasure in mouse primordial germ cells

31 March 2020

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The dynamics of genome-wide DNA methylation reprogramming in mouse primordial germ cells

31 March 2020

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Global mapping of DNA methylation in mouse promoters reveals epigenetic reprogramming of pluripotency genes

31 March 2020

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Genome-scale DNA methylation maps of pluripotent and differentiated cells

31 March 2020

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Genome-wide reprogramming in the mouse germ line entails the base excision repair pathway

31 March 2020

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Tet1 is dispensable for maintaining pluripotency and its loss is compatible with embryonic and postnatal development

31 March 2020

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Tet1 controls meiosis by regulating meiotic gene expression

31 March 2020

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Complex genome-wide transcription dynamics orchestrated by Blimp1 for the specification of the germ cell lineage in mice

31 March 2020

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Replication-coupled passive DNA demethylation for the erasure of genome imprints in mice

31 March 2020

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Cellular dynamics associated with the genome-wide epigenetic reprogramming in migrating primordial germ cells in mice.

31 March 2020

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Chromatin dynamics during epigenetic reprogramming in the mouse germ line

31 March 2020

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Dynamic CpG island methylation landscape in oocytes and preimplantation embryos

31 March 2020

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Developmental acquisition of genome-wide DNA methylation occurs prior to meiosis in male germ cells.

31 March 2020

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Dnmt3L and the establishment of maternal genomic imprints

31 March 2020

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Essential role for de novo DNA methyltransferase Dnmt3a in paternal and maternal imprinting

31 March 2020

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Genetic evidence for Dnmt3a-dependent imprinting during oocyte growth obtained by conditional knockout with Zp3-Cre and complete exclusion of Dnmt3b by chimera formation

31 March 2020

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Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L

31 March 2020

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Role of the Dnmt3 family in de novo methylation of imprinted and repetitive sequences during male germ cell development in the mouse.

31 March 2020

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Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks

31 March 2020

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Lsh is required for meiotic chromosome synapsis and retrotransposon silencing in female germ cells

31 March 2020

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A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice

31 March 2020

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Role for piRNAs and noncoding RNA in de novo DNA methylation of the imprinted mouse Rasgrf1 locus.

31 March 2020

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Developmentally regulated piRNA clusters implicate MILI in transposon control

31 March 2020

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DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes

31 March 2020

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Dynamic reprogramming of DNA methylation in the early mouse embryo.

31 March 2020

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Active demethylation of the paternal genome in the mouse zygote

31 March 2020

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Differential DNA methylation reprogramming of various repetitive sequences in mouse preimplantation embryos

31 March 2020

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Dynamic link of DNA demethylation, DNA strand breaks and repair in mouse zygotes.

31 March 2020

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Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine

31 March 2020

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5-Hydroxymethylcytosine in the mammalian zygote is linked with epigenetic reprogramming

31 March 2020

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The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes

31 March 2020

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A role for the elongator complex in zygotic paternal genome demethylation

31 March 2020

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Replication-dependent loss of 5-hydroxymethylcytosine in mouse preimplantation embryos

31 March 2020

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Distribution of p53 binding protein 1 (53BP1) and phosphorylated H2A.X during mouse preimplantation development in the absence of DNA damage

31 March 2020

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Epigenetic reprogramming and development: a unique heterochromatin organization in the preimplantation mouse embryo

31 March 2020

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PRC1 and Suv39h specify parental asymmetry at constitutive heterochromatin in early mouse embryos

31 March 2020

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Dynamic chromatin modifications characterise the first cell cycle in mouse embryos.

31 March 2020

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PGC7 binds histone H3K9me2 to protect against conversion of 5mC to 5hmC in early embryos

31 March 2020

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PGC7/Stella protects against DNA demethylation in early embryogenesis

31 March 2020

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Maternal and zygotic Dnmt1 are necessary and sufficient for the maintenance of DNA methylation imprints during preimplantation development

31 March 2020

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Dynamics of Dnmt1 methyltransferase expression and intracellular localization during oogenesis and preimplantation development.

31 March 2020

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Recognition and potential mechanisms for replication and erasure of cytosine hydroxymethylation

31 March 2020

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Recognition of 5-hydroxymethylcytosine by the Uhrf1 SRA domain

31 March 2020

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Endogenous cytosine damage products alter the site selectivity of human DNA maintenance methyltransferase DNMT1.

31 March 2020

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Maintenance of paternal methylation and repression of the imprinted H19 gene requires MBD3

31 March 2020

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Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells

31 March 2020

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Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification

31 March 2020

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31 March 2020

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Mbd3, a component of the NuRD co-repressor complex, is required for development of pluripotent cells

31 March 2020

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Control elements of Dnmt1 gene are regulated in cell-cycle dependent manner

31 March 2020

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Human DNA-(Cytosine-5) Methyltransferase-PCNA Complex as a Target for p21WAF1

31 March 2020

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The SRA protein Np95 mediates epigenetic inheritance by recruiting Dnmt1 to methylated DNA

31 March 2020

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UHRF1 plays a role in maintaining DNA methylation in mammalian cells

31 March 2020

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Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism

31 March 2020

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Structural basis for recognition of hemi-methylated DNA by the SRA domain of human UHRF1

31 March 2020

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DNMT1 stability is regulated by proteins coordinating deubiquitination and acetylation-driven ubiquitination

31 March 2020

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Regulation of DNMT1 stability through SET7-mediated lysine methylation in mammalian cells

31 March 2020

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DNMT1 forms a complex with Rb, E2F1 and HDAC1 and represses transcription from E2F-responsive promoters

31 March 2020

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The lysine demethylase LSD1 (KDM1) is required for maintenance of global DNA methylation

31 March 2020

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DNA methyltransferase Dnmt1 associates with histone deacetylase activity

31 March 2020

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Association of UHRF1 with methylated H3K9 directs the maintenance of DNA methylation

31 March 2020

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DNA methylation density influences the stability of an epigenetic imprint and Dnmt3a/b-independent de novo methylation.

31 March 2020

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Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1

31 March 2020

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Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells.

31 March 2020

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Thymine DNA glycosylase is essential for active DNA demethylation by linked deamination-base excision repair

31 March 2020

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Embryonic lethal phenotype reveals a function of TDG in maintaining epigenetic stability

31 March 2020

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PIWI-interacting small RNAs: the vanguard of genome defence

31 March 2020

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MOV10L1 is necessary for protection of spermatocytes against retrotransposons by Piwi-interacting RNAs

31 March 2020

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Loss of the Mili-interacting Tudor domain-containing protein-1 activates transposons and alters the Mili-associated small RNA profile

31 March 2020

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The TDRD9-MIWI2 complex is essential for piRNA-mediated retrotransposon silencing in the mouse male germline

31 March 2020

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DNA modification mechanisms and gene activity during development

31 March 2020

1 reference

https://pubmed.ncbi.nlm.nih.gov/23400093

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Dnmt3L cooperates with the Dnmt3 family of de novo DNA methyltransferases to establish maternal imprints in mice

1 reference

https://pubmed.ncbi.nlm.nih.gov/23400093

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Methylation levels of maternal and paternal genomes during preimplantation development

1 reference

https://pubmed.ncbi.nlm.nih.gov/23400093

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=23400093

30 April 2017

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

389969

Dimensions Publication ID

1016511715

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OpenCitations bibliographic resource ID

389969

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