Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence (Q29032100)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22143240 AND SRC:MED&resulttype=core&format=json

17 January 2020

title

Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence (English)

2 references

26 March 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22143240 AND SRC:MED&resulttype=core&format=json

17 January 2020

main subject

cis-regulatory element

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22143240 AND SRC:MED&resulttype=core&format=json

17 January 2020

author name string

Patricia J Wittkopp

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22143240 AND SRC:MED&resulttype=core&format=json

17 January 2020

publication date

6 December 2011

2 references

26 March 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22143240 AND SRC:MED&resulttype=core&format=json

17 January 2020

published in

Nature Reviews Genetics

2 references

26 March 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22143240 AND SRC:MED&resulttype=core&format=json

17 January 2020

volume

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22143240 AND SRC:MED&resulttype=core&format=json

17 January 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22143240 AND SRC:MED&resulttype=core&format=json

17 January 2020

page(s)

59-69

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22143240 AND SRC:MED&resulttype=core&format=json

Gene Regulation for Higher Cells: A Theory

17 January 2020

cites work

1 reference

Evolution at two levels in humans and chimpanzees

21 January 2018

1 reference

Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution

21 January 2018

1 reference

The loci of evolution: how predictable is genetic evolution?

21 January 2018

1 reference

Enhancer function: new insights into the regulation of tissue-specific gene expression

21 January 2018

1 reference

Transcriptional Enhancers in Animal Development and Evolution

21 January 2018

1 reference

Functional and Mechanistic Diversity of Distal Transcription Enhancers

21 January 2018

1 reference

Reverse transcriptional profiling: non-correspondence of transcript level variation and proximal promoter polymorphism

21 January 2018

1 reference

The evolutionary significance of cis-regulatory mutations

21 January 2018

1 reference

Shadow enhancers as a source of evolutionary novelty

21 January 2018

1 reference

Shadow enhancers foster robustness of Drosophila gastrulation

21 January 2018

1 reference

Long-range control of gene expression: emerging mechanisms and disruption in disease

21 January 2018

1 reference

Sepsid even-skipped enhancers are functionally conserved in Drosophila despite lack of sequence conservation

21 January 2018

1 reference

Conservation of enhancer location in divergent insects

21 January 2018

1 reference

Nomadic enhancers: tissue-specific cis-regulatory elements of yellow have divergent genomic positions among Drosophila species

21 January 2018

1 reference

Detection of regulatory variation in mouse genes

21 January 2018

1 reference

Evolutionary changes in cis and trans gene regulation

21 January 2018

1 reference

A yeast hybrid provides insight into the evolution of gene expression regulation.

21 January 2018

1 reference

Regulatory divergence in Drosophila revealed by mRNA-seq.

21 January 2018

1 reference

Alignment and prediction of cis-regulatory modules based on a probabilistic model of evolution

21 January 2018

1 reference

TRANSFAC: transcriptional regulation, from patterns to profiles

21 January 2018

1 reference

YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface

21 January 2018

1 reference

Identification of functional elements and regulatory circuits by Drosophila modENCODE

21 January 2018

1 reference

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project

21 January 2018

1 reference

ChIP-seq accurately predicts tissue-specific activity of enhancers

21 January 2018

1 reference

The UCSC Genome Browser database: update 2011

21 January 2018

1 reference

Sequencing breakthroughs for genomic ecology and evolutionary biology

21 January 2018

1 reference

Simple and highly efficient BAC recombineering using galK selection

21 January 2018

1 reference

The art of reporter proteins in science: past, present and future applications

21 January 2018

1 reference

Construction of transgenic Drosophila by using the site-specific integrase from phage phiC31

21 January 2018

1 reference

Transgenic tools for members of the genus Drosophila with sequenced genomes.

21 January 2018

1 reference

Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila

21 January 2018

1 reference

The regulation and evolution of a genetic switch controlling sexually dimorphic traits in Drosophila

21 January 2018

1 reference

Rapid evolution of sex pheromone-producing enzyme expression in Drosophila

21 January 2018

1 reference

A gene-centered C. elegans protein-DNA interaction network

21 January 2018

1 reference

DNA-bound transcription factor complexes analysed by mass-spectrometry: binding of novel proteins to the human c-fos SRE and related sequences

21 January 2018

1 reference

Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences

21 January 2018

1 reference

A systems approach to measuring the binding energy landscapes of transcription factors

21 January 2018

1 reference

Morphological evolution caused by many subtle-effect substitutions in regulatory DNA.

21 January 2018

1 reference

The evolution of gene regulation underlies a morphological difference between two Drosophila sister species.

21 January 2018

1 reference

Human-specific gain of function in a developmental enhancer

21 January 2018

1 reference

Evolutionary origin of a novel gene expression pattern through co-option of the latent activities of existing regulatory sequences

21 January 2018

1 reference

Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer

21 January 2018

1 reference

Human-specific loss of regulatory DNA and the evolution of human-specific traits

21 January 2018

1 reference

Transposable elements as sources of variation in animals and plants

21 January 2018

1 reference

A single p450 allele associated with insecticide resistance in Drosophila.

21 January 2018

1 reference

Cis-regulatory elements in the Accord retrotransposon result in tissue-specific expression of the Drosophila melanogaster insecticide resistance gene Cyp6g1

21 January 2018

1 reference

Strong selective sweep associated with a transposon insertion in Drosophila simulans.

21 January 2018

1 reference

A distal enhancer and an ultraconserved exon are derived from a novel retroposon

21 January 2018

1 reference

Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53.

21 January 2018

1 reference

Regulation of body pigmentation by the Abdominal-B Hox protein and its gain and loss in Drosophila evolution

21 January 2018

1 reference

Does positive selection drive transcription factor binding site turnover? A test with Drosophila cis-regulatory modules

21 January 2018

1 reference

Transcription factor binding variation in the evolution of gene regulation

21 January 2018

1 reference

Tissue-specific transcriptional regulation has diverged significantly between human and mouse

21 January 2018

1 reference

Divergence of transcription factor binding sites across related yeast species

21 January 2018

1 reference

The evolution of combinatorial gene regulation in fungi

21 January 2018

1 reference

Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding

21 January 2018

1 reference

Variation in transcription factor binding among humans

21 January 2018

1 reference

Species-specific transcription in mice carrying human chromosome 21

21 January 2018

1 reference

Genetic analysis of variation in transcription factor binding in yeast

21 January 2018

1 reference

Binding site turnover produces pervasive quantitative changes in transcription factor binding between closely related Drosophila species

21 January 2018

1 reference

Coupling of enhancer and insulator properties identified in two retrotransposons modulates their mutagenic impact on nearby genes

21 January 2018

1 reference

Modification of heat-shock gene expression in Drosophila melanogaster populations via transposable elements.

21 January 2018

1 reference

De novo genesis of enhancers in vertebrates

21 January 2018

1 reference

Repeated morphological evolution through cis-regulatory changes in a pleiotropic gene

21 January 2018

1 reference

Loss-of-function mutation in a repressor module of human-specifically activated enhancer HACNS1.

21 January 2018

1 reference

Stepwise modification of a modular enhancer underlies adaptation in a Drosophila population

21 January 2018

1 reference

Multiple Functional Variants in cis Modulate PDYN Expression

21 January 2018

1 reference

The genetic basis of adaptive pigmentation variation in Drosophila melanogaster

21 January 2018

1 reference

Intraspecific polymorphism to interspecific divergence: genetics of pigmentation in Drosophila

21 January 2018

1 reference

Widespread parallel evolution in sticklebacks by repeated fixation of Ectodysplasin alleles

21 January 2018

1 reference

The genetic theory of adaptation: a brief history

21 January 2018

1 reference

Mutations and quantitative genetic variation: lessons from Drosophila

21 January 2018

1 reference

Fundamental concepts in genetics: Effective population size and patterns of molecular evolution and variation

21 January 2018

1 reference

Convergence and parallelism reconsidered: what have we learned about the genetics of adaptation?

21 January 2018

1 reference

Regulatory evolution of shavenbaby/ovo underlies multiple cases of morphological parallelism

21 January 2018

1 reference

Comment on "Human-specific gain of function in a developmental enhancer".

21 January 2018

1 reference

Phenomics: the next challenge

21 January 2018

1 reference

The locus of evolution: evo devo and the genetics of adaptation

21 January 2018

1 reference

Resurrecting the role of transcription factor change in developmental evolution.

21 January 2018

1 reference

Regulatory changes underlying expression differences within and between Drosophila species.

21 January 2018

1 reference

Natural selection on cis and trans regulation in yeasts

21 January 2018

1 reference

Regulatory divergence modifies limb length between mammals

21 January 2018

1 reference

optix drives the repeated convergent evolution of butterfly wing pattern mimicry.

21 January 2018

1 reference

New technologies, new findings, and new concepts in the study of vertebrate cis-regulatory sequences

21 January 2018

1 reference

Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution

21 January 2018

1 reference

Big genomes facilitate the comparative identification of regulatory elements

21 January 2018

1 reference

Evolution of cis-regulatory sequence and function in Diptera

21 January 2018

1 reference

Conserved expression without conserved regulatory sequence: the more things change, the more they stay the same

21 January 2018

1 reference

Comparative genomics of gene regulation-conservation and divergence of cis-regulatory information.

21 January 2018

1 reference

Evidence for stabilizing selection in a eukaryotic enhancer element.

21 January 2018

1 reference

Functional evolution of a cis-regulatory module

21 January 2018

1 reference

Evolution of yellow gene regulation and pigmentation in Drosophila.

21 January 2018

1 reference

Rapid evolutionary rewiring of a structurally constrained eye enhancer

21 January 2018

1 reference

An aneuploid mouse strain carrying human chromosome 21 with Down syndrome phenotypes

21 January 2018

1 reference

Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura

21 January 2018

1 reference

Evolutionary Divergence and Convergence in Proteins

21 January 2018

1 reference

Determining the specificity of protein–DNA interactions

31 March 2020

1 reference

Using reporter genes to study cis-regulatory elements

31 March 2020

1 reference

12 December 2020

The signature of positive selection at randomly chosen loci.

1 reference

12 December 2020

TATA box polymorphisms in human gene promoters and associated hereditary pathologies.

1 reference

12 December 2020

Evidence for redundancy but not trans factor-cis element coevolution in the regulation of Drosophila Yp genes

1 reference

12 December 2020

Identifiers

DOI

10.1038/NRG3095

3 references

26 March 2017

Consolidated OpenCitations Corpus – April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22143240 AND SRC:MED&resulttype=core&format=json

Dimensions Publication ID

17 January 2020

1044859878

0 references

1 reference

Consolidated OpenCitations Corpus – April 2017

2 references

Consolidated OpenCitations Corpus – April 2017