Evolution of eukaryotic transcription: insights from the genome of Giardia lamblia (Q28770149)

2

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Mitchell Sogin

4

object named as

Mitchell L Sogin

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author name string

Aaron A Best

1

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Gary J Olsen

Revised subunit structure of yeast transcription factor IIH (TFIIH) and reconciliation with human TFIIH.

5

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language of work or name

English

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publication date

August 2004

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published in

Genome Research

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volume

14

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issue

8

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page(s)

1537-47

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cites work

1 reference

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TFIIH plays an essential role in RNA polymerase I transcription

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The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba

16 March 2017

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The Rpb9 subunit of RNA polymerase II binds transcription factor TFIIE and interferes with the SAGA and elongator histone acetyltransferases

16 March 2017

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Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi

16 March 2017

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Biology of Giardia lamblia

16 March 2017

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TIF-IA, the factor mediating growth-dependent control of ribosomal RNA synthesis, is the mammalian homolog of yeast Rrn3p

16 March 2017

1 reference

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The recruitment of RNA polymerase I on rDNA is mediated by the interaction of the A43 subunit with Rrn3

16 March 2017

1 reference

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RNA polymerase I transcription factor Rrn3 is functionally conserved between yeast and human

16 March 2017

1 reference

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Amitochondriate amoebae and the evolution of DNA-dependent RNA polymerase II

16 March 2017

1 reference

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Functional and structural organization of Brf, the TFIIB-related component of the RNA polymerase III transcription initiation complex

16 March 2017

1 reference

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A mitochondrial-like chaperonin 60 gene in Giardia lamblia: evidence that diplomonads once harbored an endosymbiont related to the progenitor of mitochondria

16 March 2017

1 reference

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PAML: a program package for phylogenetic analysis by maximum likelihood

16 March 2017

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

16 March 2017

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Transcription elongation through DNA arrest sites. A multistep process involving both RNA polymerase II subunit RPB9 and TFIIS.

16 March 2017

1 reference

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The general transcription factors of RNA polymerase II

16 March 2017

1 reference

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TreeView: an application to display phylogenetic trees on personal computers

16 March 2017

1 reference

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Co-crystal structure of TBP recognizing the minor groove of a TATA element

16 March 2017

1 reference

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Crystal structure of a yeast TBP/TATA-box complex

16 March 2017

1 reference

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The sequence, and its evolutionary implications, of a Thermococcus celer protein associated with transcription

16 March 2017

1 reference

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C25, an essential RNA polymerase III subunit related to the RNA polymerase II subunit RPB7

16 March 2017

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

16 March 2017

1 reference

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A mutation in the C31 subunit of Saccharomyces cerevisiae RNA polymerase III affects transcription initiation.

16 March 2017

1 reference

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Structure of a new nucleic-acid-binding motif in eukaryotic transcriptional elongation factor TFIIS

16 March 2017

1 reference

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Amino acid substitution matrices from protein blocks

16 March 2017

1 reference

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Microsporidia: Biology and Evolution of Highly Reduced Intracellular Parasites

16 March 2017

1 reference

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An approximately unbiased test of phylogenetic tree selection

7 April 2017

1 reference

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CONSEL: for assessing the confidence of phylogenetic tree selection

7 April 2017

2 references

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7 April 2017

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CRITICA: coding region identification tool invoking comparative analysis

3 June 2018

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Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes

7 April 2017

1 reference

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The transcriptional complexity of the TFIIH complex

7 April 2017

1 reference

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A common site on TBP for transcription by RNA polymerases II and III

3 June 2018

1 reference

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Assessing functional divergence in EF-1alpha and its paralogs in eukaryotes and archaebacteria

3 June 2018

1 reference

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The phylogenetic diversity of eukaryotic transcription

3 June 2018

1 reference

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Rpa12p, a conserved RNA polymerase I subunit with two functional domains

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509262

The abundance of sterile transcripts in Giardia lamblia.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509262

Basal and regulated transcription in Archaea

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509262

Comparison of the RNA polymerase III transcription machinery in Schizosaccharomyces pombe, Saccharomyces cerevisiae and human

3 June 2018

1 reference

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The RNA polymerase III transcription apparatus

3 June 2018

1 reference

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The 14th Datta Lecture. TFIIH: from transcription to clinic

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509262

Giardia lamblia expresses a proteobacterial-like DnaK homolog

3 June 2018

1 reference

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The RDP-II (Ribosomal Database Project).

3 June 2018

1 reference

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Archaeal RNA polymerase subunits F and P are bona fide homologs of eukaryotic RPB4 and RPB12.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509262

The Giardia genome project database.

3 June 2018

1 reference

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Core histones of the amitochondriate protist, Giardia lamblia.

3 June 2018

1 reference

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Microsporidia: accumulating molecular evidence that a group of amitochondriate and suspectedly primitive eukaryotes are just curious fungi

3 June 2018

1 reference

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Transcriptional analysis of the glutamate dehydrogenase gene in the primitive eukaryote, Giardia lamblia. Identification of a primordial gene promoter

3 June 2018

1 reference

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Survey and summary: transcription by RNA polymerases I and III.

3 June 2018

1 reference

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Methanobacterium thermoautotrophicum RNA polymerase and transcription in vitro.

3 June 2018

1 reference

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Identification and characterization of a ran gene promoter in the protozoan pathogen Giardia lamblia

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509262

The yeast RNA polymerase III transcription machinery: a paradigm for eukaryotic gene activation.

3 June 2018

1 reference

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Subunits of yeast RNA polymerases: structure and function

3 June 2018

1 reference

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Microsporidia are related to Fungi: evidence from the largest subunit of RNA polymerase II and other proteins

3 June 2018

1 reference

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In vitro assembly of an archaeal D-L-N RNA polymerase subunit complex reveals a eukaryote-like structural arrangement

3 June 2018

1 reference

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Sequence survey of the Giardia lamblia genome

3 June 2018

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Microsporidian Encephalitozoon cuniculi, a unicellular eukaryote with an unusual chromosomal dispersion of ribosomal genes and a LSU rRNA reduced to the universal core.

3 June 2018

1 reference

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A mitochondrial Hsp70 orthologue in Vairimorpha necatrix : molecular evidence that microsporidia once contained mitochondria

3 June 2018

1 reference

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Dual role of the C34 subunit of RNA polymerase III in transcription initiation.

3 June 2018

1 reference

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Evidence for loss of mitochondria in Microsporidia from a mitochondrial-type HSP70 in Nosema locustae.

3 June 2018

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Complete nucleotide sequences of the genes encoding translation elongation factors 1 alpha and 2 from a microsporidian parasite, Glugea plecoglossi: implications for the deepest branching of eukaryotes

3 June 2018

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Alpha-tubulin from early-diverging eukaryotic lineages and the evolution of the tubulin family

3 June 2018

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Two transcription factors related with the eucaryal transcription factors TATA-binding protein and transcription factor IIB direct promoter recognition by an archaeal RNA polymerase.

3 June 2018

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Protein phylogeny of translation elongation factor EF-1 alpha suggests microsporidians are extremely ancient eukaryotes

3 June 2018

1 reference

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Cell biology of the primitive eukaryote Giardia lamblia

3 June 2018

1 reference

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Transcription factor IID in the Archaea: sequences in the Thermococcus celer genome would encode a product closely related to the TATA-binding protein of eukaryotes

3 June 2018

1 reference

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Analysis of consensus sequence patterns inGiardia cytoskeletongene promoters

3 June 2018

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Transcription in archaea: similarity to that in eucarya

3 June 2018

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Phylogenetic place of mitochondrion-lacking protozoan, Giardia lamblia, inferred from amino acid sequences of elongation factor 2.

3 June 2018

1 reference

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Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes

3 June 2018

1 reference

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RNA polymerases B and C are more closely related to each other than to RNA polymerase A.

3 June 2018

1 reference

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Phylogenetic meaning of the kingdom concept: an unusual ribosomal RNA from Giardia lamblia

3 June 2018

1 reference

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The phylogenetic relations of DNA-dependent RNA polymerases of archaebacteria, eukaryotes, and eubacteria

3 June 2018

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Nucleotide sequence of the gene encoding the largest subunit of the DNA-dependent RNA polymerase III of Giardia lamblia

3 June 2018

1 reference

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Giardia lamblia RNA polymerase II: amanitin-resistant transcription.

3 June 2018

1 reference

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Rapid switching of TFIIH between RNA polymerase I and II transcription and DNA repair in vivo

26 November 2018

1 reference

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Analyses of RNA Polymerase II genes from free-living protists: phylogeny, long branch attraction, and the eukaryotic big bang

26 November 2018

1 reference

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Characterization of a bi-directional promoter for divergent transcription of a PHD-zinc finger protein gene and a ran gene in the protozoan pathogen Giardia lamblia

26 November 2018

1 reference

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Initiator and upstream elements in the alpha2-tubulin promoter of Giardia lamblia

26 November 2018

1 reference

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Isolation and characterization of the fission yeast gene Sprpa12 reveals that the conserved C-terminal zinc-finger region is dispensable for the function of its product.

26 November 2018

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RNA polymerase II subunit Rpb9 regulates transcription elongation in vivo.

26 November 2018

1 reference

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Characteristics of the cDNA of the Schizosaccharomyces pombe rpa43 gene: structural similarity of the Rpa43 subunit of RNA-polymerase I with the Rpc25 subunit of RNA-polymerase III

26 November 2018

1 reference

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Phylogenetic analysis of the TATA box binding protein (TBP) gene from Nosema locustae: evidence for a microsporidia-fungi relationship and spliceosomal intron loss

26 November 2018

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Phylogenetic analysis of beta-tubulin sequences from amitochondrial protozoa

26 November 2018

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Interaction between a complex of RNA polymerase III subunits and the 70-kDa component of transcription factor IIIB.

26 November 2018

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26 November 2018

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Protein phylogeny gives a robust estimation for early divergences of eukaryotes: phylogenetic place of a mitochondria-lacking protozoan, Giardia lamblia

26 November 2018

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Giardia lamblia: ultrastructural basis of protein transport during growth and encystation

26 November 2018

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Giardia lamblia: Traffic of a Trophozoite Variant Surface Protein and a Major Cyst Wall Epitope during Growth, Encystation, and Antigenic Switching

26 November 2018

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Evolution of RNA polymerases and branching patterns of the three major groups of Archaebacteria

26 November 2018

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Yeast RNA Polymerase II Subunit RPB9

26 November 2018

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12 December 2020

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12 December 2020

Basal and regulated transcription in archaea

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12 December 2020

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12 December 2020

Structure and function of eukaryotic nuclear DNA-dependent RNA polymerase I

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release_bbhfduiyffd25nlw4x62mnjada

Identifiers

DOI

10.1101/GR.2256604

0 references

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/bbhfduiyffd25nlw4x62mnjada

24 November 2022