Text mining for biology - the way forward: opinions from leading scientists (Q28756933)

10

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Martin Krallinger

12

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Christian Blaschke

4

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Barend Mons

13

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Frank Gannon

6

Dietrich Rebholz-Schuhmann

Frank Gannon

0 references

16

Dietrich Rebholz-Schuhmann

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Casey M Bergman

Casey M Bergman

2

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Judith A. Blake

Judith Blake

3

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William Hersh

William Hersh

9

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Manuel C. Peitsch

Manuel C Peitsch

15

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Russ Altman

1

Russ B Altman

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Hagit Shatkay

17

Hagit Shatkay

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author name string

Aaron Cohen

5

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Frank Gannon

6

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Les Grivell

7

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Udo Hahn

8

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Seán I O'Donoghue

14

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Alfonso Valencia

Structured digital abstract makes text mining easy

18

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language of work or name

English

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publication date

2008

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published in

Genome Biology

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volume

9 Suppl 2

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issue

Suppl 2

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page(s)

S7

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559991

SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559991

Key biology databases go wiki

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559991

STRING 7--recent developments in the integration and prediction of protein interactions

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559991

Will a biological database be different from a biological journal?

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559991

16 March 2017

Which gene did you mean?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559991

Facts from text--is text mining ready to deliver?

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559991

Assessing computational tools for the discovery of transcription factor binding sites

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559991

A gene network for navigating the literature

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559991

PreBIND and Textomy--mining the biomedical literature for protein-protein interactions using a support vector machine

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559991

CAFASP-1: critical assessment of fully automated structure prediction methods

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559991

Extraction of regulatory gene/protein networks from Medline

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559991

Information extraction technologies for the life science industry

9 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559991

Computer-assisted reading in drug discovery

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559991

MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559991

Automatic reconstruction of a bacterial regulatory network using Natural Language Processing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559991

A natural language processing (NLP) tool to assist in the curation of the laboratory Mouse Tumor Biology Database.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559991

Integrating image data into biomedical text categorization

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559991

The application of systems biology to drug discovery

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559991

The TREC 2004 genomics track categorization task: classifying full text biomedical documents.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559991

Enhancing access to the Bibliome: the TREC 2004 Genomics Track.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559991

A survey of current work in biomedical text mining

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559991

The NLM Indexing Initiative's Medical Text Indexer

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559991

Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559991

EGASP: collaboration through competition to find human genes

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559991

Text mining: powering the database revolution

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18834498