The Cell Collective: toward an open and collaborative approach to systems biology. (Q28727777)

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10 February 2020

title

The Cell Collective: toward an open and collaborative approach to systems biology (English)

1 reference

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10 February 2020

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1

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10 February 2020

Alex Madrahimov

6

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10 February 2020

author name string

Bryan Kowal

2

1 reference

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10 February 2020

Sean McClenathan

3

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10 February 2020

Mitchell Bruckner

4

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10 February 2020

Thaine Rowley

5

1 reference

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10 February 2020

Ben Wicks

7

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10 February 2020

Manish Shrestha

8

1 reference

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10 February 2020

Kahani Limbu

9

1 reference

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10 February 2020

Jim A Rogers

10

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10 February 2020

language of work or name

English

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publication date

7 August 2012

1 reference

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10 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22871178 AND SRC:MED&resulttype=core&format=json

10 February 2020

volume

6

1 reference

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10 February 2020

issue

1

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page(s)

96

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describes a project that uses

10 February 2020

Cytoscape

object named as

Cytoscape

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Cytoscape

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cites work

PathCase-SB: integrating data sources and providing tools for systems biology research

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

Pathway Commons, a web resource for biological pathway data

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

WikiPathways: pathway editing for the people

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

Modelling biological complexity: a physical scientist's perspective

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

Modeling cell signaling networks

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

UniProt: the Universal Protein knowledgebase

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

A natural class of robust networks

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

Emergence of Scaling in Random Networks

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

Emergent decision-making in biological signal transduction networks

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

Cytoscape 2.8: new features for data integration and network visualization

23 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

Systems biology: a brief overview

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

UniProt Knowledgebase: a hub of integrated protein data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

Computational systems biology

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

Toward a comprehensive language for biological systems

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

ChemChains: a platform for simulation and analysis of biochemical networks aimed to laboratory scientists

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

Logical modelling of regulatory networks with GINsim 2.3.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

Modeling ERBB receptor-regulated G1/S transition to find novel targets for de novo trastuzumab resistance

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

Boolean network simulations for life scientists

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

Practical application of CellML 1.1: The integration of new mechanisms into a human ventricular myocyte model

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

3 June 2018

Executable cell biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

2020 computing: science in an exponential world

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

Systems biology markup language: Level 2 and beyond

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

Pathways database system: an integrated system for biological pathways

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

Interaction between Src and a C-terminal proline-rich motif of Akt is required for Akt activation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

Java Web Simulation (JWS); a web based database of kinetic models

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

Integrin signaling and cell growth control

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443426

Systems biology 101--what you need to know

3 June 2018

1 reference

https://api.crossref.org/works/10.1186/1752-0509-6-96

BoolNet--an R package for generation, reconstruction and analysis of Boolean networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1752-0509-6-96

The CellML Model Repository

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1752-0509-6-96

Logical analysis of the budding yeast cell cycle

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1752-0509-6-96

Computational biology: Biological logic

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1752-0509-6-96

21 January 2018

Identifiers

DOI

10.1186/1752-0509-6-96

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22871178 AND SRC:MED&resulttype=core&format=json

journals/bmcsb/HelikarKMBRMWSLR12

10 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1021096684

0 references

OpenCitations bibliographic resource ID

123988

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

123988

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22871178 AND SRC:MED&resulttype=core&format=json

10 February 2020

PubMed publication ID

22871178

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22871178 AND SRC:MED&resulttype=core&format=json