Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis (Q28706418)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23487304 AND SRC:MED&resulttype=core&format=json

25 February 2020

title

Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis (English)

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25 February 2020

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high-throughput sequencing

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1

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25 February 2020

Jan C van Haarst

2

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25 February 2020

Ruud A de Maagd

8

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25 February 2020

5

Arnaud G Bovy

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25 February 2020

author name string

Chris Maliepaard

3

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25 February 2020

Henri van de Geest

4

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25 February 2020

Michiel Lammers

6

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25 February 2020

Gerco C Angenent

7

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25 February 2020

language of work or name

English

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publication date

13 March 2013

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Journal of Experimental Botany

25 February 2020

published in

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25 February 2020

volume

64

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25 February 2020

issue

7

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25 February 2020

page(s)

1863-1878

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The tomato genome sequence provides insights into fleshy fruit evolution

25 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

SHRiMP2: Sensitive yet Practical Short Read Mapping

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

Rfam: Wikipedia, clans and the "decimal" release

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

The Sequence Alignment/Map format and SAMtools

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

MicroRNAS and their regulatory roles in plants

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

MicroRNAs: genomics, biogenesis, mechanism, and function

17 March 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

17 March 2017

Prediction of plant microRNA targets

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

BEDTools: a flexible suite of utilities for comparing genomic features

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

microRNA-directed phasing during trans-acting siRNA biogenesis in plants

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

Regulation of flowering time and floral organ identity by a MicroRNA and its APETALA2-like target genes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

MicroRNA regulation of plant innate immune receptors.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

Sculpting the maturation, softening and ethylene pathway: the influences of microRNAs on tomato fruits

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

Genetics and control of tomato fruit ripening and quality attributes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

MicroRNAs and their diverse functions in plants

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

Transcriptome-wide identification of microRNA targets in rice

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

Biochemical and molecular analysis of pink tomatoes: deregulated expression of the gene encoding transcription factor SlMYB12 leads to pink tomato fruit color

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

Small RNAs and their roles in plant development.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

Small RNAs in tomato fruit and leaf development.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

Regulation of LANCEOLATE by miR319 is required for compound-leaf development in tomato

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

MtHAP2-1 is a key transcriptional regulator of symbiotic nodule development regulated by microRNA169 in Medicago truncatula

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

Temporal regulation of shoot development in Arabidopsis thaliana by miR156 and its target SPL3

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

Sweating the small stuff: microRNA discovery in plants

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

Auxin: regulation, action, and interaction.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

MicroRNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3638818

Identification and characterization of a novel miR159 target not related to MYB in tomato

3 June 2018

1 reference

A GAMYB-like gene in tomato and its expression during seed germination

21 January 2018

1 reference

MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for arabidopsis lateral root development

21 January 2018

1 reference

Inhibition of lamina outgrowth following Solanum lycopersicum AUXIN RESPONSE FACTOR 10 (SlARF10) derepression.

21 January 2018

1 reference

Transcriptome and metabolite profiling show that APETALA2a is a major regulator of tomato fruit ripening.

21 January 2018

1 reference

MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs

21 January 2018

1 reference

A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening.

21 January 2018

1 reference

Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns.

21 January 2018

1 reference

Identification of novel small RNAs in tomato (Solanum lycopersicum).

21 January 2018

1 reference

The auxin receptor homologue in Solanum lycopersicum stimulates tomato fruit set and leaf morphogenesis

21 January 2018

1 reference

Tissue dependent variations of DNA methylation and endoreduplication levels during tomato fruit development and ripening

21 January 2018

1 reference

Over-expression of sly-miR156a in tomato results in multiple vegetative and reproductive trait alterations and partial phenocopy of the sft mutant

21 January 2018

1 reference

Expression of aberrant forms of AUXIN RESPONSE FACTOR8 stimulates parthenocarpy in Arabidopsis and tomato

21 January 2018

1 reference

12 December 2020

Loss-of-function mutations of the rice GAMYB gene impair alpha-amylase expression in aleurone and flower development

1 reference

12 December 2020

Molecular and genetic characterization of a novel pleiotropic tomato-ripening mutant

1 reference

12 December 2020

A tomato (Solanum lycopersicum) APETALA2/ERF gene, SlAP2a, is a negative regulator of fruit ripening

1 reference

12 December 2020

ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germination

1 reference

12 December 2020

Identifiers

DOI

10.1093/JXB/ERT049

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23487304 AND SRC:MED&resulttype=core&format=json

25 February 2020

1 reference

2 references

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25 February 2020

PubMed publication ID

23487304

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23487304 AND SRC:MED&resulttype=core&format=json