Improved calibration of the human mitochondrial clock using ancient genomes (Q28655692)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25100861 AND SRC:MED&resulttype=core&format=json

12 March 2020

title

Improved calibration of the human mitochondrial clock using ancient genomes (English)

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12 March 2020

8

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12 March 2020

François Balloux

9

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12 March 2020

6

Vera Warmuth

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12 March 2020

author name string

Adrien Rieux

1

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12 March 2020

Anders Eriksson

2

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12 March 2020

Mingkun Li

3

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12 March 2020

Benjamin Sobkowiak

4

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12 March 2020

Lucy A Weinert

5

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12 March 2020

Andres Ruiz-Linares

7

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12 March 2020

language of work or name

English

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publication date

5 August 2014

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Molecular Biology and Evolution

12 March 2020

published in

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12 March 2020

volume

31

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12 March 2020

issue

10

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12 March 2020

page(s)

2780-2792

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Beyond fossil calibrations: realities of molecular clock practices in evolutionary biology

12 March 2020

cites work

1 reference

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Neolithic mitochondrial haplogroup H genomes and the genetic origins of Europeans

17 March 2017

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A revised timescale for human evolution based on ancient mitochondrial genomes

17 March 2017

1 reference

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DNA analysis of an early modern human from Tianyuan Cave, China

17 March 2017

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The Expansion of mtDNA Haplogroup L3 within and out of Africa

17 March 2017

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Population expansion in the North African late Pleistocene signalled by mitochondrial DNA haplogroup U6

17 March 2017

1 reference

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The complete mitochondrial DNA genome of an unknown hominin from southern Siberia

17 March 2017

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Out of Africa: modern human origins special feature: human origins: out of Africa

17 March 2017

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Quantitative prediction of molecular clock and ka/ks at short timescales

7 April 2017

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Climate shaped the worldwide distribution of human mitochondrial DNA sequence variation

17 March 2017

1 reference

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Correcting for purifying selection: an improved human mitochondrial molecular clock

17 March 2017

1 reference

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Mutation and evolutionary rates in adélie penguins from the antarctic

17 March 2017

1 reference

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A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing

17 March 2017

1 reference

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The crucial role of calibration in molecular date estimates for the peopling of the Americas

17 March 2017

1 reference

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Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes

17 March 2017

1 reference

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A Bayesian evaluation of human mitochondrial substitution rates

17 March 2017

1 reference

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The effect of inappropriate calibration: three case studies in molecular ecology

17 March 2017

1 reference

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Genetic variation and population structure in native Americans

17 March 2017

1 reference

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BEAST: Bayesian evolutionary analysis by sampling trees

17 March 2017

1 reference

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Elevated substitution rates estimated from ancient DNA sequences

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

Paleontological evidence to date the tree of life

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

Genetic evidence for complex speciation of humans and chimpanzees

17 March 2017

1 reference

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Relaxed phylogenetics and dating with confidence

17 March 2017

1 reference

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The role of selection in the evolution of human mitochondrial genomes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

New material of the earliest hominid from the Upper Miocene of Chad

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

MUSCLE: multiple sequence alignment with high accuracy and high throughput

17 March 2017

1 reference

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The application of molecular genetic approaches to the study of human evolution

17 March 2017

1 reference

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Natural selection shaped regional mtDNA variation in humans

17 March 2017

1 reference

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Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data

17 March 2017

1 reference

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A new hominid from the Upper Miocene of Chad, Central Africa

17 March 2017

1 reference

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Modern human origins: progress and prospects

17 March 2017

1 reference

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Frequentist estimation of coalescence times from nucleotide sequence data using a tree-based partition

17 March 2017

1 reference

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A human genome diversity cell line panel

17 March 2017

1 reference

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Mitochondrial genome variation and the origin of modern humans

17 March 2017

1 reference

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Molecular analysis of Neanderthal DNA from the northern Caucasus

17 March 2017

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The genomic record of Humankind's evolutionary roots

17 March 2017

1 reference

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Immunological Time Scale for Hominid Evolution

17 March 2017

1 reference

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Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

17 March 2017

1 reference

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Ancient DNA: extraction, characterization, molecular cloning, and enzymatic amplification

17 March 2017

1 reference

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PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

Time dependency of molecular rate estimates and systematic overestimation of recent divergence times

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

A complete mtDNA genome of an early modern human from Kostenki, Russia

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

Targeted retrieval and analysis of five Neandertal mtDNA genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

Perspective: gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies

7 April 2017

1 reference

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Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty

7 April 2017

1 reference

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Evidence for time dependency of molecular rate estimates

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

Molecular clocks: when times are a-changin'

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

Genetic and fossil evidence for the origin of modern humans

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

Accurate model selection of relaxed molecular clocks in bayesian phylogenetics

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

Testing the impact of calibration on molecular divergence times using a fossil-rich group: the case of Nothofagus (Fagales).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

Time-dependent rates of molecular evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

Time dependency of molecular rates in ancient DNA data sets, a sampling artifact?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

Using time-structured data to estimate evolutionary rates of double-stranded DNA viruses

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

Evaluating the mitochondrial timescale of human evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

Statistical inferences in phylogeography

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

Characterizing the time dependency of human mitochondrial DNA mutation rate estimates

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

Genetic evidence and the modern human origins debate

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

mtDNA variation predicts population size in humans and reveals a major Southern Asian chapter in human prehistory

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

Bayesian estimation of sequence damage in ancient DNA.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

Genetics and the making of Homo sapiens

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

Geology and palaeontology of the Upper Miocene Toros-Menalla hominid locality, Chad

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

New approaches to dating suggest a recent age for the human mtDNA ancestor

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4166928

Expansion dating: calibrating molecular clocks in marine species from expansions onto the Sunda Shelf Following the Last Glacial Maximum.

3 June 2018

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSU222

Analyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSU222

Alarm bells for the molecular clock? No support for Ho et al.'s model of time-dependent molecular rate estimates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSU222

Using genetic evidence to evaluate four palaeoanthropological hypotheses for the timing of Neanderthal and modern human origins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSU222

Bayesian estimation of substitution rates from ancient DNA sequences with low information content

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSU222

Phylogenetic estimation of timescales using ancient DNA: the effects of temporal sampling scheme and uncertainty in sample ages.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSU222

Elevated substitution rate estimates from ancient DNA: model violation and bias of Bayesian methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSU222

Accommodating the effect of ancient DNA damage on inferences of demographic histories

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSU222

A hominid tibia from Middle Pleistocene sediments at Boxgrove, UK.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSU222

Revising the human mutation rate: implications for understanding human evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSU222

Molecular dating when rates vary

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSU222

The worm in the fruit of the mitochondrial DNA tree

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSU222

21 January 2018

Identifiers

DOI

10.1093/MOLBEV/MSU222

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1664338

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25100861 AND SRC:MED&resulttype=core&format=json

OpenCitations bibliographic resource ID

12 March 2020

1664338

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25100861 AND SRC:MED&resulttype=core&format=json

12 March 2020

PubMed publication ID

25100861

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25100861 AND SRC:MED&resulttype=core&format=json