Transposable elements in a clade of three tetraploids and a diploid relative, focusing on Gypsy amplification (Q28650669)

April 2022 Public Data File from Crossref

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cites work

Single-copy nuclear genes place haustorial Hydnoraceae within piperales and reveal a cretaceous origin of multiple parasitic angiosperm lineages

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Bayesian phylogenetics with BEAUti and the BEAST 1.7

17 March 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381496

The Gypsy Database (GyDB) of mobile genetic elements: release 2.0

17 March 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381496

Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees

17 March 2017

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MIPSPlantsDB--plant database resource for integrative and comparative plant genome research

17 March 2017

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RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

17 March 2017

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A survey of nuclear ribosomal internal transcribed spacer substitution rates across angiosperms: an approximate molecular clock with life history effects

17 March 2017

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Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat

17 March 2017

1 reference

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Tandem repeats finder: a program to analyze DNA sequences

17 March 2017

1 reference

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Genomic repeat abundances contain phylogenetic signal.

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381496

The contributions of transposable elements to the structure, function, and evolution of plant genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381496

Natural pathways to polyploidy in plants and consequences for genome reorganization

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381496

Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381496

The dynamics of LTR retrotransposon accumulation across 25 million years of panicoid grass evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381496

FastUniq: a fast de novo duplicates removal tool for paired short reads

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381496

Differential dynamics of transposable elements during long-term diploidization of Nicotiana section Repandae (Solanaceae) allopolyploid genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381496

Next-generation sequencing reveals the impact of repetitive DNA across phylogenetically closely related genomes of Orobanchaceae.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381496

Systematic exploration of error sources in pyrosequencing flowgram data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381496

Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381496

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381496

Impact of transposable elements on the organization and function of allopolyploid genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381496

Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381496

Chromodomains direct integration of retrotransposons to heterochromatin.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381496

Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381496

Evolutionary genomics of chromoviruses in eukaryotes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381496

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381496

Characterization of the LTR retrotransposon repertoire of a plant clade of six diploid and one tetraploid species

3 June 2018

1 reference

https://api.crossref.org/works/10.1186/S13100-015-0034-8

Diversity and evolution of Ty1-copia and Ty3-gypsy retroelements in the non-photosynthetic flowering plants Orobanche and Phelipanche (Orobanchaceae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/S13100-015-0034-8

Phylogeny of holoparasitic Orobanche (Orobanchaceae) inferred from nuclear ITS sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/S13100-015-0034-8

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/S13100-015-0034-8

Chromosome numbers and karyotype evolution in holoparasitic Orobanche (Orobanchaceae) and related genera

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25834645

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Next Generation Sequencing Reveals Genome Downsizing in Allotetraploid Nicotiana tabacum, Predominantly through the Elimination of Paternally Derived Repetitive DNAs

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25834645

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S13100-015-0034-8

1 reference

Dimensions Publication ID

1033304141

0 references

1 reference

1 reference

PubMed publication ID

25834645

1 reference