An Efficient Microarray-Based Genotyping Platform for the Identification of Drug-Resistance Mutations in Majority and Minority Subpopulations of HIV-1 Quasispecies (Q28554999)

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English	An Efficient Microarray-Based Genotyping Platform for the Identification of Drug-Resistance Mutations in Majority and Minority Subpopulations of HIV-1 Quasispecies	scientific article

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scholarly article

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27959928 AND SRC:MED&resulttype=core&format=json

29 March 2020

An Efficient Microarray-Based Genotyping Platform for the Identification of Drug-Resistance Mutations in Majority and Minority Subpopulations of HIV-1 Quasispecies (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27959928 AND SRC:MED&resulttype=core&format=json

29 March 2020

viral quasispecies

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based on heuristic

inferred from title

drug resistance

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based on heuristic

inferred from title

Verónica Martín

1

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29 March 2020

2

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29 March 2020

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29 March 2020

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29 March 2020

Esteban Domingo Solans

13

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29 March 2020

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29 March 2020

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María Fernández-Algar

3

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29 March 2020

Helena G Dos Santos

4

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29 March 2020

Patricia Garrido

5

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29 March 2020

María Pernas

6

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29 March 2020

Víctor Parro

7

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29 March 2020

José Luis Torán

11

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29 March 2020

David Abia

12

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29 March 2020

Javier García-Pérez

9

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29 March 2020

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13 December 2016

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29 March 2020

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29 March 2020

11

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29 March 2020

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29 March 2020

e0166902

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29 March 2020

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Creative Commons Attribution 4.0 International

13 December 2016

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April 2022 Public Data File from Crossref

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0 references

Longitudinal Detection and Persistence of Minority Drug-Resistant Populations and Their Effect on Salvage Therapy

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19 March 2017

Geographic and temporal trends in the molecular epidemiology and genetic mechanisms of transmitted HIV-1 drug resistance: an individual-patient- and sequence-level meta-analysis

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Clinically relevant transmitted drug resistance to first line antiretroviral drugs and implications for recommendations

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19 March 2017

Prevalence and evolution of low frequency HIV drug resistance mutations detected by ultra deep sequencing in patients experiencing first line antiretroviral therapy failure

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Simultaneous detection of major drug resistance mutations in the protease and reverse transcriptase genes for HIV-1 subtype C by use of a multiplex allele-specific assay

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Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data

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Viral quasispecies evolution

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19 March 2017

Low-abundance HIV drug-resistant viral variants in treatment-experienced persons correlate with historical antiretroviral use

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19 March 2017

Minority HIV-1 drug resistance mutations are present in antiretroviral treatment-naïve populations and associate with reduced treatment efficacy

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A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

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Mutation rates among RNA viruses

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2015 Update of the Drug Resistance Mutations in HIV-1.

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29 September 2017

Factors associated with antiretroviral treatment uptake and adherence: a review. Perspectives from Australia, Canada, and the United Kingdom

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29 September 2017

Transmission of HIV Drug Resistance and the Predicted Effect on Current First-line Regimens in Europe

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Primary resistance to integrase strand-transfer inhibitors in Europe

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29 September 2017

Virological failure after 1 year of first-line ART is not associated with HIV minority drug resistance in rural Cameroon .

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29 September 2017

Minority HIV-1 drug-resistant mutations and prevention of mother-to-child transmission: perspectives for resource-limited countries.

1 reference

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29 September 2017

Increase in transmitted resistance to non-nucleoside reverse transcriptase inhibitors among newly diagnosed HIV-1 infections in Europe

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29 September 2017

Development of a simple microarray for genotyping HIV-1 drug resistance mutations in the reverse transcriptase gene in rural Tanzania

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29 September 2017

Clinical implications of HIV-1 minority variants

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29 September 2017

Analysis of 454 sequencing error rate, error sources, and artifact recombination for detection of Low-frequency drug resistance mutations in HIV-1 DNA.

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Next-generation sequencing technology in clinical virology

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29 September 2017

Impact of minority nonnucleoside reverse transcriptase inhibitor resistance mutations on resistance genotype after virologic failure

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The impact of quasispecies dynamics on the use of therapeutics

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HIV-1 antiretroviral resistance: scientific principles and clinical applications

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29 September 2017

Quasispecies as a matter of fact: viruses and beyond.

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29 September 2017

Structural basis for the biological relevance of the invariant apical stem in IRES-mediated translation.

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29 September 2017

European recommendations for the clinical use of HIV drug resistance testing: 2011 update

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29 September 2017

Low-frequency HIV-1 drug resistance mutations and risk of NNRTI-based antiretroviral treatment failure: a systematic review and pooled analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5154500

29 September 2017

Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5154500

29 September 2017

Quasispecies theory and the behavior of RNA viruses

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29 September 2017

Low frequency nonnucleoside reverse-transcriptase inhibitor-resistant variants contribute to failure of efavirenz-containing regimens in treatment- experienced patients

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5154500

29 September 2017

Pre-existing minority drug-resistant HIV-1 variants, adherence, and risk of antiretroviral treatment failure

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5154500

29 September 2017

Multidrug-resistant variants of HIV type 1 (HIV-1) can exist in cells as defective quasispecies and be rescued by superinfection with other defective HIV-1 variants

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29 September 2017

Stable frequency of HIV-1 transmitted drug resistance in patients at the time of primary infection over 1996-2006 in France

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29 September 2017

Minority report: hidden memory genomes in HIV-1 quasispecies and possible clinical implications.

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29 September 2017

Genotypic resistance testing in HIV by arrayed primer extension

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29 September 2017

Mechanistic insights into the role of Val75 of HIV-1 reverse transcriptase in misinsertion and mispair extension fidelity of DNA synthesis.

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29 September 2017

HIV-1 drug-resistance and drug-dependence

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29 September 2017

Microarray-based identification of antigenic variants of foot-and-mouth disease virus: a bioinformatics quality assessment

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29 September 2017

Sensitivity and specificity of the ViroSeq human immunodeficiency virus type 1 (HIV-1) genotyping system for detection of HIV-1 drug resistance mutations by use of an ABI PRISM 3100 genetic analyzer

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29 September 2017

Structural analysis of hepatitis C RNA genome using DNA microarrays

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29 September 2017

Accuracy of the TRUGENE HIV-1 genotyping kit.

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29 September 2017

Duration and fitness dependence of quasispecies memory

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29 September 2017

Role of a dipeptide insertion between codons 69 and 70 of HIV-1 reverse transcriptase in the mechanism of AZT resistance

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29 September 2017

Comparative evaluation of three human immunodeficiency virus genotyping systems: the HIV-GenotypR method, the HIV PRT GeneChip assay, and the HIV-1 RT line probe assay.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5154500

29 September 2017

Memory in viral quasispecies

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5154500

29 September 2017

Performance of the Affymetrix GeneChip HIV PRT 440 platform for antiretroviral drug resistance genotyping of human immunodeficiency virus type 1 clades and viral isolates with length polymorphisms

1 reference

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29 September 2017

Low-frequency NNRTI-resistant HIV-1 variants and relationship to mutational load in antiretroviral-naïve subjects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5154500

3 June 2018

Comparison of ultra-deep versus Sanger sequencing detection of minority mutations on the HIV-1 drug resistance interpretations after virological failure.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5154500

3 June 2018

Next-Generation Sequencing to Help Monitor Patients Infected with HIV: Ready for Clinical Use?

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3 June 2018

End-to-end crosstalk within the hepatitis C virus genome mediates the conformational switch of the 3'X-tail region

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3 June 2018

Origin of minority drug-resistant HIV-1 variants in primary HIV-1 infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5154500

3 June 2018

Prevalence of key resistance mutations K65R, K103N, and M184V as minority HIV-1 variants in chronically HIV-1 infected, treatment-naïve patients

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5154500

3 June 2018

Transmission of drug-resistant HIV-1 is stabilizing in Europe

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5154500

3 June 2018

Memory in retroviral quasispecies: experimental evidence and theoretical model for human immunodeficiency virus

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3 June 2018

Extensive polymorphisms observed in HIV-1 clade B protease gene using high-density oligonucleotide arrays.

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3 June 2018

On the nature of virus quasispecies

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21 January 2018

Minority memory genomes can influence the evolution of HIV-1 quasispecies in vivo

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21 January 2018

Human immunodeficiency virus proviral DNA from peripheral blood and lymph nodes demonstrates concordant resistance mutations to zidovudine (codon 215) and didanosine (codon 74). Division of AIDS Treatment Research Initiative 003 Study Group

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21 January 2018

Low level of the K103N HIV-1 above a threshold is associated with virological failure in treatment-naive individuals undergoing efavirenz-containing therapy

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0166902

21 January 2018

Minority quasispecies of drug-resistant HIV-1 that lead to early therapy failure in treatment-naive and -adherent patients

1 reference

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21 January 2018

Low-abundance drug-resistant viral variants in chronically HIV-infected, antiretroviral treatment-naive patients significantly impact treatment outcomes

1 reference

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21 January 2018

Transmission of HIV-1 minority-resistant variants and response to first-line antiretroviral therapy.

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21 January 2018

Dynamics of dominance of a dipeptide insertion in reverse transcriptase of HIV-1 from patients subjected to prolonged therapy

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21 January 2018

Structural analysis provides insights into the modular organization of picornavirus IRES.

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21 January 2018

An efficient k-means clustering algorithm: analysis and implementation

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21 January 2018

The folding of the hepatitis C virus internal ribosome entry site depends on the 3'-end of the viral genome

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21 January 2018

Mutational Patterns Associated with the 69 Insertion Complex in Multi-drug-resistant HIV-1 Reverse Transcriptase that Confer Increased Excision Activity and High-level Resistance to Zidovudine

1 reference

https://pubmed.ncbi.nlm.nih.gov/27959928

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1371/JOURNAL.PONE.0166902

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27959928 AND SRC:MED&resulttype=core&format=json

29 March 2020

2016PLoSO..1166902M

0 references

PMC publication ID

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27959928 AND SRC:MED&resulttype=core&format=json

29 March 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27959928 AND SRC:MED&resulttype=core&format=json

29 March 2020

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