Characterizing the Syphilis-Causing Treponema pallidum ssp. pallidum Proteome Using Complementary Mass Spectrometry (Q28553940)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27606673 AND SRC:MED&resulttype=core&format=json

31 May 2020

Caroline E Cameron

7

1 reference

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31 May 2020

Xaveer Van Ostade

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27606673 AND SRC:MED&resulttype=core&format=json

31 May 2020

author name string

Simon Houston

2

1 reference

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31 May 2020

Karen V Lithgow

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27606673 AND SRC:MED&resulttype=core&format=json

31 May 2020

Conor J Meehan

4

1 reference

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31 May 2020

Michal Strouhal

5

1 reference

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31 May 2020

David Šmajs

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27606673 AND SRC:MED&resulttype=core&format=json

31 May 2020

Chris R Kenyon

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27606673 AND SRC:MED&resulttype=core&format=json

31 May 2020

Geert A Van Raemdonck

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27606673 AND SRC:MED&resulttype=core&format=json

PLoS Neglected Tropical Diseases

31 May 2020

language of work or name

English

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publication date

September 2016

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published in

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27606673 AND SRC:MED&resulttype=core&format=json

31 May 2020

volume

10

1 reference

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31 May 2020

issue

9

1 reference

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31 May 2020

page(s)

e0004988

1 reference

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Creative Commons Attribution 4.0 International

31 May 2020

copyright license

start time

8 September 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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Genetic diversity in Treponema pallidum: implications for pathogenesis, evolution and molecular diagnostics of syphilis and yaws

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A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide

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Assessment of cell-surface exposure and vaccinogenic potentials of Treponema pallidum candidate outer membrane proteins

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Prediction of protein subcellular localization

19 March 2017

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Crystal structure of the 47-kDa lipoprotein of Treponema pallidum reveals a novel penicillin-binding protein

19 March 2017

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The HMMTOP transmembrane topology prediction server

19 March 2017

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Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

19 March 2017

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Complete Genome Sequence of Treponema pallidum, the Syphilis Spirochete

19 March 2017

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SignalP 4.0: discriminating signal peptides from transmembrane regions

19 March 2017

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Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

7 April 2017

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Methods and applications of absolute protein quantification in microbial systems.

7 April 2017

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Shotgun proteomics of bacterial pathogens: advances, challenges and clinical implications

29 September 2017

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A Retrospective Study on Genetic Heterogeneity within Treponema Strains: Subpopulations Are Genetically Distinct in a Limited Number of Positions.

29 September 2017

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Identification of functional candidates amongst hypothetical proteins of Treponema pallidum ssp. pallidum.

29 September 2017

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Identification and characterization of sORF-encoded polypeptides

29 September 2017

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Periplasmic quality control in biogenesis of outer membrane proteins

29 September 2017

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A Homology Model Reveals Novel Structural Features and an Immunodominant Surface Loop/Opsonic Target in the Treponema pallidum BamA Ortholog TP_0326

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Proteomics beyond trypsin.

29 September 2017

1 reference

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Bipartite Topology of Treponema pallidum Repeat Proteins C/D and I: OUTER MEMBRANE INSERTION, TRIMERIZATION, AND PORIN FUNCTION REQUIRE A C-TERMINAL β-BARREL DOMAIN

29 September 2017

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Transcription of TP0126, Treponema pallidum putative OmpW homolog, is regulated by the length of a homopolymeric guanosine repeat

29 September 2017

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Characterization of the E. coli proteome and its modifications during growth and ethanol stress

29 September 2017

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Genome-scale identification and characterization of moonlighting proteins

29 September 2017

1 reference

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Computational characterization of moonlighting proteins

29 September 2017

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An overview of protein moonlighting in bacterial infection

29 September 2017

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Antigenic variation of TprK facilitates development of secondary syphilis

29 September 2017

1 reference

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The Cross-Talk between Spirochetal Lipoproteins and Immunity

29 September 2017

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Viscous dynamics of Lyme disease and syphilis spirochetes reveal flagellar torque and drag

29 September 2017

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Resequencing of Treponema pallidum ssp. pallidum strains Nichols and SS14: correction of sequencing errors resulted in increased separation of syphilis treponeme subclusters

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Fine analysis of genetic diversity of the tpr gene family among treponemal species, subspecies and strains.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Global estimates of syphilis in pregnancy and associated adverse outcomes: analysis of multinational antenatal surveillance data

29 September 2017

1 reference

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ETMB-RBF: discrimination of metal-binding sites in electron transporters based on RBF networks with PSSM profiles and significant amino acid pairs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Genome reduction promotes increase in protein functional complexity in bacteria

29 September 2017

1 reference

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The bacterial outer membrane β-barrel assembly machinery

29 September 2017

1 reference

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TprC/D (Tp0117/131), a Trimeric, Pore-Forming Rare Outer Membrane Protein of Treponema pallidum, Has a Bipartite Domain Structure

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Bacterial Moonlighting Proteins and Bacterial Virulence

29 September 2017

1 reference

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The proteome of Mycoplasma pneumoniae, a supposedly "simple" cell

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

The Immunopathobiology of Syphilis: The Manifestations and Course of Syphilis Are Determined by the Level of Delayed-Type Hypersensitivity

29 September 2017

1 reference

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TP0326, a Treponema pallidum β‐barrel assembly machinery A (BamA) orthologue and rare outer membrane protein

29 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Standing genetic variation in contingency loci drives the rapid adaptation of Campylobacter jejuni to a novel host

29 September 2017

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Genome analysis of Treponema pallidum subsp. pallidum and subsp. pertenue strains: most of the genetic differences are localized in six regions

29 September 2017

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Surface Immunolabeling and Consensus Computational Framework To Identify Candidate Rare Outer Membrane Proteins of Treponema pallidum

29 September 2017

1 reference

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Cellular architecture of Treponema pallidum: novel flagellum, periplasmic cone, and cell envelope as revealed by cryo electron tomography

29 September 2017

1 reference

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PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes.

29 September 2017

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Characterization and serologic analysis of the Treponema pallidum proteome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Antigenic variation in Treponema pallidum: TprK sequence diversity accumulates in response to immune pressure during experimental syphilis.

29 September 2017

1 reference

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A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome

29 September 2017

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Correlation of mRNA and protein in complex biological samples.

29 September 2017

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Cryo-electron tomography elucidates the molecular architecture of Treponema pallidum, the syphilis spirochete

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

'Nothing is permanent but change'- antigenic variation in persistent bacterial pathogens

29 September 2017

1 reference

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Global proteome analysis of Leptospira interrogans

29 September 2017

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Membrane protein architects: the role of the BAM complex in outer membrane protein assembly.

29 September 2017

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The porin and the permeating antibiotic: a selective diffusion barrier in Gram-negative bacteria.

29 September 2017

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Turnover of the human proteome: determination of protein intracellular stability by dynamic SILAC.

29 September 2017

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SPOCTOPUS: a combined predictor of signal peptides and membrane protein topology.

29 September 2017

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A novel Treponema pallidum antigen, TP0136, is an outer membrane protein that binds human fibronectin

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Bacterial contingency loci: the role of simple sequence DNA repeats in bacterial adaptation

29 September 2017

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Biological basis for syphilis

29 September 2017

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Lipoprotein computational prediction in spirochaetal genomes

29 September 2017

1 reference

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Lipoprotein-dependent and -independent immune responses to spirochetal infection

29 September 2017

1 reference

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Genome scale identification of Treponema pallidum antigens

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Transcriptome of Treponema pallidum: gene expression profile during experimental rabbit infection

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Treponema pallidum fibronectin-binding proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

BOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Antibody Responses Elicited against theTreponema pallidumRepeat Proteins Differ during Infection with Different Isolates ofTreponema pallidumsubsp.pallidum

29 September 2017

1 reference

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Moonlighting proteins: old proteins learning new tricks.

29 September 2017

1 reference

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Prediction of lipoprotein signal peptides in Gram-negative bacteria

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

mreps: Efficient and flexible detection of tandem repeats in DNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Systematic cloning of Treponema pallidum open reading frames for protein expression and antigen discovery

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

BAC library of T. pallidum DNA in E. coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

The sequence-variable, single-copy tprK gene of Treponema pallidum Nichols strain UNC and Street strain 14 encodes heterogeneous TprK proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

From microbial genome sequence to applications

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

The tprK gene is heterogeneous among Treponema pallidum strains and has multiple alleles

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Polypeptides of Treponema pallidum: progress toward understanding their structural, functional, and immunologic roles. Treponema Pallidum Polypeptide Research Group.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

The 47-kDa major lipoprotein immunogen of Treponema pallidum is a penicillin-binding protein with carboxypeptidase activity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Oxygen uptake by Treponema pallidum

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Secondary lesions in rabbits experimentally infected with Treponema pallidum

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Factors affecting the multiplication and subculture of Treponema pallidum subsp. pallidum in a tissue culture system

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Demonstration of rare protein in the outer membrane of Treponema pallidum subsp. pallidum by freeze-fracture analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Outer membrane ultrastructure explains the limited antigenicity of virulent Treponema pallidum

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Effects of molecular oxygen, oxidation-reduction potential, and antioxidants upon in vitro replication of Treponema pallidum subsp. pallidum.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Defining a minimal cell: essentiality of small ORFs and ncRNAs in a genome-reduced bacterium

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Increasing trends of syphilis among men who have sex with men in high income countries

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Complete genome sequence of Treponema pallidum strain DAL-1.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Comparative Investigation of the Genomic Regions Involved in Antigenic Variation of the TprK Antigen among Treponemal Species, Subspecies, and Strains

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

An alternative DNA structure is necessary for pilin antigenic variation in Neisseria gonorrhoeae

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Length of guanosine homopolymeric repeats modulates promoter activity of subfamily II tpr genes of Treponema pallidum ssp. pallidum.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Immunological evaluation and cellular location analysis of the TprI antigen of Treponema pallidum subsp. pallidum

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Treponema pallidum and Borrelia burgdorferi lipoproteins and synthetic lipopeptides activate monocytes/macrophages

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

TprK sequence diversity accumulates during infection of rabbits with Treponema pallidum subsp. pallidum Nichols strain

3 June 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PNTD.0004988

A novel beta-lactamase activity from a penicillin-binding protein of Treponema pallidum and why syphilis is still treatable with penicillin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PNTD.0004988

Quantitative shotgun proteomics using a protease with broad specificity and normalized spectral abundance factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PNTD.0004988

Quantitative analysis of tpr gene expression in Treponema pallidum isolates: Differences among isolates and correlation with T-cell responsiveness in experimental syphilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PNTD.0004988

TpF1 from Treponema pallidum activates inflammasome and promotes the development of regulatory T cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PNTD.0004988

Statistical Analysis of Membrane Proteome Expression Changes inSaccharomycescerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PNTD.0004988

Treponema pallidum in Gel Microdroplets: A Method for Topological Analysis of BamA (TP0326) and Localization of Rare Outer Membrane Proteins

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

Reactivity of antibodies from syphilis patients to a protein array representing the Treponema pallidum proteome

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015957

The genome of Treponema pallidum: new light on the agent of syphilis

27 November 2018

1 reference

12 December 2020

Opsonic potential, protective capacity, and sequence conservation of the Treponema pallidum subspecies pallidum Tp92

1 reference

12 December 2020

Purification of Treponema pallidum, Nichols Strain, by Percoll Density Gradient Centrifugation

1 reference

12 December 2020

The microaerophilic nature of Treponema pallidum: enhanced survival and incorporation of tritiated adenine under microaerobic conditions in the presence or absence of reducing compounds

1 reference

12 December 2020

Isolation and laboratory maintenance of Treponema pallidum

1 reference

12 December 2020

Segregation of B and T cell epitopes of Treponema pallidum repeat protein K to variable and conserved regions during experimental syphilis infection

1 reference

12 December 2020

10.1371/JOURNAL.PNTD.0004988

Identifiers

DOI

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27606673 AND SRC:MED&resulttype=core&format=json

31 May 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27606673 AND SRC:MED&resulttype=core&format=json

31 May 2020

PubMed publication ID

27606673

2 references