Integrating cellular metabolism into a multiscale whole-body model (Q28484829)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23133351 AND SRC:MED&resulttype=core&format=json

17 February 2020

title

Integrating cellular metabolism into a multiscale whole-body model (English)

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17 February 2020

2

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17 February 2020

Rolf Findeisen

4

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17 February 2020

Jörg Lippert

5

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17 February 2020

Lars Kuepfer

6

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17 February 2020

author name string

Markus Krauss

1

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17 February 2020

Steffen Borchers

3

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17 February 2020

language of work or name

English

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publication date

25 October 2012

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PLOS Computational Biology

17 February 2020

published in

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17 February 2020

volume

8

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17 February 2020

issue

10

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17 February 2020

page(s)

e1002750

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Creative Commons Attribution 4.0 International

17 February 2020

copyright license

start time

25 October 2012

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Mechanisms of acetaminophen-induced liver necrosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

HMDB: a knowledgebase for the human metabolome

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Acetylcysteine for acetaminophen poisoning

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Global reconstruction of the human metabolic network based on genomic and bibliomic data

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Therapeutic effects of xanthine oxidase inhibitors: renaissance half a century after the discovery of allopurinol

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Large-scale 13C-flux analysis reveals mechanistic principles of metabolic network robustness to null mutations in yeast

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Relationship between the inhibition constant (K1) and the concentration of inhibitor which causes 50 per cent inhibition (I50) of an enzymatic reaction

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Genome-scale models of microbial cells: evaluating the consequences of constraints

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Using expression data for quantification of active processes in physiologically based pharmacokinetic modeling

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Multiscale Mechanistic Modeling in Pharmaceutical Research and Development

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Prediction of a potentially effective dose in humans for BAY 60–5521, a potent inhibitor of cholesteryl ester transfer protein (CETP) by allometric species scaling and combined pharmacodynamic and physiologically‐based pharmacokinetic modelling

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Physiologically-Based Pharmacokinetics in Drug Development and Regulatory Science

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

HepatoNet1: a comprehensive metabolic reconstruction of the human hepatocyte for the analysis of liver physiology

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Prediction and validation of cell alignment along microvessels as order principle to restore tissue architecture in liver regeneration

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Metabolic flux distributions: genetic information, computational predictions, and experimental validation.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Interpreting metabolomic profiles using unbiased pathway models

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Adult-onset ornithine transcarbamylase (OTC) deficiency unmasked by the Atkins' diet

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Predicting metabolic biomarkers of human inborn errors of metabolism

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Dynamic analysis of integrated signaling, metabolic, and regulatory networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Human metabolic network reconstruction and its impact on drug discovery and development

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Synthesis of resveratrol analogues, and evaluation of their cytotoxic and xanthine oxidase inhibitory activities

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Acetaminophen (paracetamol) is a selective cyclooxygenase-2 inhibitor in man.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

The Edinburgh human metabolic network reconstruction and its functional analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Whole-body physiologically based pharmacokinetic models

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Pharmacokinetics/pharmacodynamics of acetaminophen analgesia in Japanese patients with chronic pain

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Diagnostics and biomarker development: priming the pipeline

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Inborn errors of metabolism: the flux from Mendelian to complex diseases.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Acetaminophen-induced acute liver failure: results of a United States multicenter, prospective study

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Blood ammonia levels and hepatic encephalopathy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Acetaminophen-induced hepatotoxicity: role of metabolic activation, reactive oxygen/nitrogen species, and mitochondrial permeability transition

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Bow ties, metabolism and disease

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

A physiological model for the estimation of the fraction dose absorbed in humans.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Integrating high-throughput and computational data elucidates bacterial networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Parallel analysis of transcript and metabolic profiles: a new approach in systems biology

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

The connectivity structure, giant strong component and centrality of metabolic networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Genome-scale microbial in silico models: the constraints-based approach.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Structure and function of xanthine oxidoreductase: where are we now?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Dynamic flux balance analysis of diauxic growth in Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Prediction of adipose tissue: plasma partition coefficients for structurally unrelated drugs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Purinergic and pyrimidinergic receptors as potential drug targets

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Pharmacokinetics and pharmacodynamics of allopurinol in elderly and young subjects

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Basic concepts of pharmacokinetic/pharmacodynamic (PK/PD) modelling

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Physiologically Based Pharmacokinetic Modeling: Principles and Applications

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Molecular aspects of paracetamol-induced hepatotoxicity and its mechanism-based prevention

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

A computational systems biology software platform for multiscale modeling and simulation: integrating whole-body physiology, disease biology, and molecular reaction networks.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Towards whole-body systems physiology.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Computational reconstruction of tissue‐specific metabolic models: application to human liver metabolism

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Physiologically based pharmacokinetic modeling 1: predicting the tissue distribution of moderate-to-strong bases

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

Severity of hyperammonemic encephalopathy correlates with brain ammonia level and saturation of glutamine synthetase in vivo.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486908

High-throughput classification of yeast mutants for functional genomics using metabolic footprinting.

2 June 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PCBI.1002750

Physiologically based pharmacokinetic modelling 2: predicting the tissue distribution of acids, very weak bases, neutrals and zwitterions

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PCBI.1002750

A physiologic model for simulating gastrointestinal flow and drug absorption in rats.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PCBI.1002750

Risk to the breast-fed neonate from codeine treatment to the mother: a quantitative mechanistic modeling study.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PCBI.1002750

Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PCBI.1002750

Xanthine oxidase inhibition by allopurinol affects the reliability of urinary caffeine metabolic ratios as markers for N -acetyltransferase 2 and CYP1A2 activities

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PCBI.1002750

Correlation between ammonia levels and the severity of hepatic encephalopathy

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PCBI.1002750

Persistent arterial hyperammonemia increases the concentration of glutamine and alanine in the brain and correlates with intracranial pressure in patients with fulminant hepatic failure

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PCBI.1002750

Development of a physiology-based whole-body population model for assessing the influence of individual variability on the pharmacokinetics of drugs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PCBI.1002750

Mechanism-based prediction of particle size-dependent dissolution and absorption: cilostazol pharmacokinetics in dogs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PCBI.1002750

Analysis of structural robustness of metabolic networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PCBI.1002750

Monte Carlo sampling can be used to determine the size and shape of the steady-state flux space

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PCBI.1002750

Pharmacogenomics of codeine, morphine, and morphine-6-glucuronide: model-based analysis of the influence of CYP2D6 activity, UGT2B7 activity, renal impairment, and CYP3A4 inhibition

21 January 2018

1 reference

12 December 2020

1 reference

12 December 2020

Physiology-based pharmacokinetic modeling: ready to be used

1 reference

12 December 2020

Network-based prediction of human tissue-specific metabolism

1 reference

12 December 2020

Plasma glutamine concentration: A guide in the management of urea cycle disorders

1 reference

12 December 2020

Ammonia metabolism during exercise in man

1 reference

12 December 2020

10.1371/JOURNAL.PCBI.1002750

Identifiers

DOI

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23133351 AND SRC:MED&resulttype=core&format=json

journals/ploscb/KraussSBFLK12

17 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23133351 AND SRC:MED&resulttype=core&format=json

17 February 2020

PubMed publication ID

23133351

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23133351 AND SRC:MED&resulttype=core&format=json