An evolutionary model-based algorithm for accurate phylogenetic breakpoint mapping and subtype prediction in HIV-1 (Q28471994)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19956739 AND SRC:MED&resulttype=core&format=json

13 February 2020

title

An evolutionary model-based algorithm for accurate phylogenetic breakpoint mapping and subtype prediction in HIV-1 (English)

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13 February 2020

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Art Poon

5

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13 February 2020

Andrew J Leigh Brown

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13 February 2020

Simon Frost

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Sergei L. Kosakovsky Pond

13 February 2020

1

object named as

Sergei L Kosakovsky Pond

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13 February 2020

7

Esther Fearnhill

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13 February 2020

author name string

Eric Stawiski

3

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13 February 2020

Colombe Chappey

4

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13 February 2020

Gareth Hughes

6

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13 February 2020

Mike B Gravenor

8

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language of work or name

English

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publication date

26 November 2009

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PLOS Computational Biology

13 February 2020

published in

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volume

5

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issue

11

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13 February 2020

page(s)

e1000581

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Creative Commons Attribution 4.0 International

13 February 2020

copyright license

start time

26 November 2009

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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The HIV type 1 epidemic in Bulgaria involves multiple subtypes and is sustained by continuous viral inflow from West and East European countries

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HIV subtypes induce distinct profiles of HIV-specific CD8( ) T cell responses

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Effect of human immunodeficiency virus Type 1 (HIV-1) subtype on disease progression in persons from Rakai, Uganda, with incident HIV-1 infection

29 September 2017

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Protein stability imposes limits on organism complexity and speed of molecular evolution

29 September 2017

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Phylogenetic surveillance of viral genetic diversity and the evolving molecular epidemiology of human immunodeficiency virus type 1.

29 September 2017

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Recombination confounds the early evolutionary history of human immunodeficiency virus type 1: subtype G is a circulating recombinant form

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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2 June 2018

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The effect of recombination on the accuracy of phylogeny estimation

2 June 2018

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At least five HIV-1 sequence subtypes (A, B, C, D, A/E) occur in England

2 June 2018

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HIV-1 nomenclature proposal

2 June 2018

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Near-full-length genome sequencing of divergent African HIV type 1 subtype F viruses leads to the identification of a new HIV type 1 subtype designated K.

21 January 2018

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Drug resistance testing provides evidence of the globalization of HIV type 1: a new circulating recombinant form.

21 January 2018

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A Modified Bootscan Algorithm for Automated Identification of Recombinant Sequences and Recombination Breakpoints

21 January 2018

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A statistical model for HIV-1 sequence classification using the subtype analyser (STAR).

21 January 2018

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Assessment of automated genotyping protocols as tools for surveillance of HIV-1 genetic diversity

21 January 2018

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Dual multiple change-point model leads to more accurate recombination detection.

21 January 2018

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Automated phylogenetic detection of recombination using a genetic algorithm

21 January 2018

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https://api.crossref.org/works/10.1371/JOURNAL.PCBI.1000581

A simple hierarchical approach to modeling distributions of substitution rates.

21 January 2018

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Estimating the Dimension of a Model

21 January 2018

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A new look at the statistical model identification

21 January 2018

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Further analysts of the data by akaike' s information criterion and the finite corrections

21 January 2018

1 reference

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Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human influenza virus A.

21 January 2018

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Antiretroviral-drug resistance among patients recently infected with HIV.

21 January 2018

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Tracking the prevalence of transmitted antiretroviral drug-resistant HIV-1: a decade of experience

21 January 2018

1 reference

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Identification of two new CRF_BF in Rio de Janeiro State, Brazil.

21 January 2018

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Unveiling the Molecular Clock in the Presence of Recombination

21 January 2018

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https://api.crossref.org/works/10.1371/JOURNAL.PCBI.1000581

Effect of HIV-1 subtype on virologic and immunologic response to starting highly active antiretroviral therapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PCBI.1000581

Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19956739

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1000581

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19956739 AND SRC:MED&resulttype=core&format=json

journals/ploscb/PondPSCPHFGBF09

13 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19956739 AND SRC:MED&resulttype=core&format=json

13 February 2020

PubMed publication ID

19956739

2 references