Impact of genomics on the understanding of microbial evolution and classification: the importance of Darwin's views on classification (Q28276251)

FEMS Microbiology Reviews

Europe PubMed Central

title

Impact of genomics on the understanding of microbial evolution and classification: the importance of Darwin's views on classification (English)

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Radhey S Gupta

1

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language of work or name

English

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publication date

July 2016

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published in

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volume

40

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issue

4

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page(s)

520-53

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cites work

Lateral gene transfer as a support for the tree of life

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Phylogenomics and molecular signatures for the order Neisseriales: proposal for division of the order Neisseriales into the emended family Neisseriaceae and Chromobacteriaceae fam. nov.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

A phylogenomic and molecular marker based proposal for the division of the genus Borrelia into two genera: the emended genus Borrelia containing only the members of the relapsing fever Borrelia, and the genus Borreliella gen. nov. containing the mem

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Identification of a Bacillus anthracis specific indel in the yeaC gene and development of a rapid pyrosequencing assay for distinguishing B. anthracis from the B. cereus group

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Evolution of protein indels in plants, animals and fungi.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Built-in loops allow versatility in domain-domain interactions: lessons from self-interacting domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

EmbA is an essential arabinosyltransferase in Mycobacterium tuberculosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Biased gene transfer in microbial evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Lateral gene transfer in eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The heat-shock-regulated grpE gene of Escherichia coli is required for bacterial growth at all temperatures but is dispensable in certain mutant backgrounds

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Phylogeny for the faint of heart: a tutorial.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Animals and fungi are each other's closest relatives: congruent evidence from multiple proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Prokaryotic evolution and the tree of life are two different things

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Do orthologous gene phylogenies really support tree-thinking?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Telling the whole story in a 10,000-genome world

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

A word-oriented approach to alignment validation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Highways of gene sharing in prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Detecting lateral genetic transfer : a phylogenetic approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Comparative genomic structure of prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Molecular signatures for Bacillus species: demarcation of the Bacillus subtilis and Bacillus cereus clades in molecular terms and proposal to limit the placement of new species into the genus Bacillus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Molecular signatures for the phylum Synergistetes and some of its subclades

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Molecular signatures for the phylum (class) Thermotogae and a proposal for its division into three orders (Thermotogales, Kosmotogales ord. nov. and Petrotogales ord. nov.) containing four families (Thermotogaceae, Fervidobacteriaceae fam. nov., Kos

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Protein based molecular markers provide reliable means to understand prokaryotic phylogeny and support Darwinian mode of evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Ten years of bacterial genome sequencing: comparative-genomics-based discoveries.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Horizontal gene transfer in evolution: facts and challenges.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Lateral Gene Transfer and the Origins of Prokaryotic Groups

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Genomes as documents of evolutionary history

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Universal trees based on large combined protein sequence data sets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The Hsp70 and Hsp60 Chaperone Machines

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Molecular evolution of the Chlamydiaceae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Genome-based taxonomic framework for the class Negativicutes: division of the class Negativicutes into the orders Selenomonadales emend., Acidaminococcales ord. nov. and Veillonellales ord. nov.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The core and unique proteins of haloarchaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Structure, function, and evolution of linear replicons in Borrelia

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Taxonomy and virulence of oral spirochetes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Developmental biology of Streptomyces from the perspective of 100 actinobacterial genome sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Toward Automatic Reconstruction of a Highly Resolved Tree of Life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Towards a prokaryotic genomic taxonomy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Ribosomal Database Project: data and tools for high throughput rRNA analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Evolutionary placement of Xanthomonadales based on conserved protein signature sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

21 January 2018

Phylogenomic networks

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

21 January 2018

The tree of one percent.

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

From protein sequence to function

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The extant core bacterial proteome is an archive of the origin of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Bacterial genomes as new gene homes: the genealogy of ORFans in E. coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

21 January 2018

Phylogenetic Taxonomy

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Multiple Chlamydiaceae species in trachoma: implications for disease pathogenesis and control

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

A genomic distance based on MUM indicates discontinuity between most bacterial species and genera.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Phylogenomics and the reconstruction of the tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Phylogenetic analysis of tufA sequences indicates a cyanobacterial origin of all plastids

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Uprooting the tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The practice of classification and the theory of evolution, and what the demise of Charles Darwin's tree of life hypothesis means for both of them

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Pattern pluralism and the Tree of Life hypothesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

What Is the Tree of Life?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Horizontal transfer of penicillin-binding protein genes in penicillin-resistant clinical isolates of Streptococcus pneumoniae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Signature genes as a phylogenomic tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Chlamydia and Chlamydiales: more than meets the eye.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Emended description of the order Chlamydiales, proposal of Parachlamydiaceae fam. nov. and Simkaniaceae fam. nov., each containing one monotypic genus...

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

How essential are nonessential genes?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Persistence drives gene clustering in bacterial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The groES and groEL heat shock gene products of Escherichia coli are essential for bacterial growth at all temperatures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Phylogenies from molecular sequences: inference and reliability

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Construction of phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Darwin's goldmine is still open: variation and selection run the world

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Hyperthermophilic Thermotoga species differ with respect to specific carbohydrate transporters and glycoside hydrolases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The genus Thermotoga: recent developments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

INTRACELLULAR COMPARTMENTATION IN PLANCTOMYCETES

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The PVC superphylum: exceptions to the bacterial definition?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Conserved 'hypothetical' proteins: new hints and new puzzles

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

'Conserved hypothetical' proteins: prioritization of targets for experimental study

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

A model of horizontal gene transfer and the bacterial phylogeny problem

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Dealing with incongruence in phylogenomic analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Conserved indels in protein sequences that are characteristic of the phylum Actinobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Phylogenomic analysis of proteins that are distinctive of Archaea and its main subgroups and the origin of methanogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Microbial systematics in the post-genomics era

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Phylogenetic framework and molecular signatures for the main clades of the phylum Actinobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Phylogenomics and protein signatures elucidating the evolutionary relationships among the Gammaproteobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Signature proteins that are distinctive characteristics of Actinobacteria and their subgroups

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Structural and phylogenetic analysis of a conserved actinobacteria-specific protein (ASP1; SCO1997) from Streptomyces coelicolor

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The cobweb of life revealed by genome-scale estimates of horizontal gene transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

How microbiology helps define the rhizome of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Phylogenetic diversity and metagenomics of candidate division OP3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Gene transfer: gene swapping craze reaches eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Prokaryotic evolution in light of gene transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Horizontal gene transfer, genome innovation and evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Protein-based phylogenies support a chimeric origin for the eukaryotic genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

DNA-DNA hybridization values and their relationship to whole-genome sequence similarities

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Uncovering major genomic features of essential genes in Bacteria and a methanogenic Archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Parachlamydiaceae: potential emerging pathogens

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Phylogeny of prokaryotes: does it exist and why should we care?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The use of signature sequences in different proteins to determine the relative branching order of bacterial divisions: evidence that Fibrobacter diverged at a similar time to Chlamydia and the Cytophaga–Flavobacterium–Bacteroides division

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Protein signatures distinctive of chlamydial species: horizontal transfers of cell wall biosynthesis genes glmU from archaea to chlamydiae and murA between chlamydiae and Streptomyces

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Distinctive protein signatures provide molecular markers and evidence for the monophyletic nature of the deinococcus-thermus phylum

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Lateral transfers of serine hydroxymethyltransferase (glyA) and UDP-N-acetylglucosamine enolpyruvyl transferase (murA) genes from free-living Actinobacteria to the parasitic chlamydiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Molecular signatures in protein sequences that are characteristics of the phylum Aquificae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Phylogeny and shared conserved inserts in proteins provide evidence that Verrucomicrobia are the closest known free-living relatives of chlamydiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Conserved indels in essential proteins that are distinctive characteristics of Chlamydiales and provide novel means for their identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

BLAST screening of chlamydial genomes to identify signature proteins that are unique for the Chlamydiales, Chlamydiaceae, Chlamydophila and Chlamydia groups of species

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Regulation of insecticidal crystal protein production in Bacillus thuringiensis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Protein phylogenies and signature sequences: evolutionary relationships within prokaryotes and between prokaryotes and eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

What are archaebacteria: life's third domain or monoderm prokaryotes related to gram-positive bacteria? A new proposal for the classification of prokaryotic organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The natural evolutionary relationships among prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The phylogeny of proteobacteria: relationships to other eubacterial phyla and eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The branching order and phylogenetic placement of species from completed bacterial genomes, based on conserved indels found in various proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Evolutionary relationships among photosynthetic bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The phylogeny and signature sequences characteristics of Fibrobacteres, Chlorobi, and Bacteroidetes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Molecular signatures (unique proteins and conserved indels) that are specific for the epsilon proteobacteria (Campylobacterales)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Protein signatures (molecular synapomorphies) that are distinctive characteristics of the major cyanobacterial clades

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Molecular signatures for the main phyla of photosynthetic bacteria and their subgroups

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Origin of diderm (Gram-negative) bacteria: antibiotic selection pressure rather than endosymbiosis likely led to the evolution of bacterial cells with two membranes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Molecular signatures that are distinctive characteristics of the vertebrates and chordates and supporting a grouping of vertebrates with the tunicates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Editorial: Applications of Genome Sequences for Discovering Characteristics that Are Unique to Different Groups of Organisms and Provide Insights into Evolutionary Relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Cloning of Giardia lamblia heat shock protein HSP70 homologs: implications regarding origin of eukaryotic cells and of endoplasmic reticulum

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Phylogeny and molecular signatures for the phylum Thermotogae and its subgroups

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Molecular Signatures for the PVC Clade (Planctomycetes, Verrucomicrobia, Chlamydiae, and Lentisphaerae) of Bacteria Provide Insights into Their Evolutionary Relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Phylogenetic framework and molecular signatures for the class Chloroflexi and its different clades; proposal for division of the class Chloroflexia class. nov. [corrected] into the suborder Chloroflexineae subord. nov., consisting of the emended fam

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Molecular signatures for the class Coriobacteriia and its different clades; proposal for division of the class Coriobacteriia into the emended order Coriobacteriales, containing the emended family Coriobacteriaceae and Atopobiaceae fam. nov., and Eg

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Phylogenomic analyses of clostridia and identification of novel protein signatures that are specific to the genus Clostridium sensu stricto (cluster I).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Critical issues in bacterial phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Chlamydiae-specific proteins and indels: novel tools for studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Molecular signatures for the phylum Aquificae and its different clades: proposal for division of the phylum Aquificae into the emended order Aquificales, containing the families Aquificaceae and Hydrogenothermaceae, and a new order Desulfurobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Phylogeny and molecular signatures (conserved proteins and indels) that are specific for the Bacteroidetes and Chlorobi species

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Signature proteins for the major clades of Cyanobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Phylogenomics and signature proteins for the alpha proteobacteria and its main groups

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

A phylogenomic and molecular markers based analysis of the phylum Chlamydiae: proposal to divide the class Chlamydiia into two orders, Chlamydiales and Parachlamydiales ord. nov., and emended description of the class Chlamydiia

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

A phylogenomic reappraisal of family-level divisions within the class Halobacteria: proposal to divide the order Halobacteriales into the families Halobacteriaceae, Haloarculaceae fam. nov., and Halococcaceae fam. nov., and the order Haloferacales i

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Molecular signatures in protein sequences that are characteristic of cyanobacteria and plastid homologues

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Phylogeny and molecular signatures for the phylum Fusobacteria and its distinct subclades

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Molecular signatures for the Crenarchaeota and the Thaumarchaeota

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Cloning of the HSP70 gene from Halobacterium marismortui: relatedness of archaebacterial HSP70 to its eubacterial homologs and a model for the evolution of the HSP70 gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Application of the Character Compatibility Approach to Generalized Molecular Sequence Data: Branching Order of the Proteobacterial Subdivisions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The energy conserving N5-methyltetrahydromethanopterin:coenzyme M methyltransferase complex from Methanobacterium thermoautotrophicum is composed of eight different subunits

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Verrucomicrobia div. nov., a new division of the bacteria containing three new species of Prosthecobacter

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Whole-genome prokaryotic phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

A higher-level phylogenetic classification of the Fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Genomic relationships and speciation times of human, chimpanzee, and gorilla inferred from a coalescent hidden Markov model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Chlamydiae as Symbionts in Eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Illuminating the Evolutionary History of Chlamydiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Phylogenetic analysis and molecular signatures defining a monophyletic clade of heterocystous cyanobacteria and identifying its closest relatives

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Ancient gene transfer as a tool in phylogenetic reconstruction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

A new view of the tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Molecular and genomic data identify the closest living relative of primates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Phylogenomics: the beginning of incongruence?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

21 January 2018

The future of taxonomy.

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Signature proteins that are distinctive of alpha proteobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Systematics of prokaryotes: the state of the art

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

21 January 2018

Earth's early atmosphere

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Horizontal gene transfer in eukaryotic evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

En route to a genome-based classification of Archaea and Bacteria?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Genomic insights that advance the species definition for prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Darwinian evolution in the light of genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The Turbulent Network Dynamics of Microbial Evolution and the Statistical Tree of Life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Horizontal gene transfer in prokaryotes: quantification and classification

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Comparison of phylogenetic trees and search for a central trend in the "forest of life".

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Is evolution Darwinian or/and Lamarckian?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Evolution of microbes and viruses: a paradigm shift in evolutionary biology?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Chlamydiaceae family, Parachlamydia spp., and Waddlia spp. in porcine abortion

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The closest BLAST hit is often not the nearest neighbor

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Statistics and truth in phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Gene arrangements and branching orders of gram-positive bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Gene arrangements characteristic of the phylum Actinobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The fate of new bacterial genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Horizontal gene transfer: a critical view

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Signature protein of the PVC superphylum

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Rooting the tree of life using nonubiquitous genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Fastidious intracellular bacteria as causal agents of community-acquired pneumonia

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Phylogeny of bacterial and archaeal genomes using conserved genes: supertrees and supermatrices

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Estimating the size of the bacterial pan-genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Evaluating Phylogenetic Congruence in the Post-Genomic Era

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Evolutionary origins of genomic repertoires in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Desulfurobacterium atlanticum sp. nov., Desulfurobacterium pacificum sp. nov. and Thermovibrio guaymasensis sp. nov., three thermophilic members of the Desulfurobacteriaceae fam. nov., a deep branching lineage within the Bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Replacement of the arginine biosynthesis operon in Xanthomonadales by lateral gene transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Laterally transferred genomic islands in Xanthomonadales related to pathogenicity and primary metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Structure and Protein-Protein Interaction Studies on Chlamydia trachomatis Protein CT670 (YscO Homolog)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The application of molecular phylogenetics to the analysis of viral genome diversity and evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The RDP-II (Ribosomal Database Project).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Early evolution without a tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Antibiotic resistance in microbes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Rhizome of life, catastrophes, sequence exchanges, gene creations, and giant viruses: how microbial genomics challenges Darwin

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The tree of life: metaphor, model, and heuristic device

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Gene orders in the upstream of 16S rRNA genes divide genera of the family Halobacteriaceae into two groups

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Gene phylogenies and the endosymbiotic origin of plastids

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Heterogeneous models place the root of the placental mammal phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

A minimal gene set for cellular life derived by comparison of complete bacterial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Structural features and the persistence of acquired proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Molecular signatures (conserved indels) in protein sequences that are specific for the order Pasteurellales and distinguish two of its main clades

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Phylogenomics and molecular signatures for species from the plant pathogen-containing order xanthomonadales

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Conserved signature indels and signature proteins as novel tools for understanding microbial phylogeny and systematics: identification of molecular signatures that are specific for the phytopathogenic genera Dickeya, Pectobacterium and Brenneria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Phylogenomic and molecular demarcation of the core members of the polyphyletic pasteurellaceae genera actinobacillus, haemophilus, and pasteurella

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Origins of major archaeal clades correspond to gene acquisitions from bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Evidence for existence of "mesotogas," members of the order Thermotogales adapted to low-temperature environments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Deep metazoan phylogeny: when different genes tell different stories.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Genes lost and genes found: evolution of bacterial pathogenesis and symbiosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The winds of (evolutionary) change: breathing new life into microbiology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

What did Darwin say about microbes, and how did microbiology respond?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

When integration fails: Prokaryote phylogeny and the tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

How stands the Tree of Life a century and a half after The Origin?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Prokaryote diversity and taxonomy: current status and future challenges

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Taxonomy of the family Halobacteriaceae: a paradigm for changing concepts in prokaryote systematics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Then and now: a systematic review of the systematics of prokaryotes in the last 80 years

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Evidence against the selfish operon theory

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

A multilocus sequence analysis approach to the phylogeny and taxonomy of the Halobacteriales.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Darwin's Theory of Descent with Modification, versus the Biblical Tree of Life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Horizontal gene transfer and phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Characterization and evolution of cell division and cell wall synthesis genes in the bacterial phyla Verrucomicrobia, Lentisphaerae, Chlamydiae, and Planctomycetes and phylogenetic comparison with rRNA genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Taxogenomics of the order Chlamydiales

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Search for a 'Tree of Life' in the thicket of the phylogenetic forest

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The tree and net components of prokaryote evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Genome-wide comparative analysis of phylogenetic trees: the prokaryotic forest of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Seeing the Tree of Life behind the phylogenetic forest

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

A proposed genus boundary for the prokaryotes based on genomic insights

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Detection of lateral gene transfer among microbial genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

On surrogate methods for detecting lateral gene transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

A polyphasic strategy incorporating genomic data for the taxonomic description of novel bacterial species

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Microbial genomics challenge Darwin

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Molecular signatures for members of the genus Dehalococcoides and the class Dehalococcoidia

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Whole-Genome Analysis of Photosynthetic Prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Mesoaciditoga lauensis gen. nov., sp. nov., a moderately thermoacidophilic member of the order Thermotogales from a deep-sea hydrothermal vent

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Shifting the genomic gold standard for the prokaryotic species definition

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Evidence that eukaryotes and eocyte prokaryotes are immediate relatives

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Identifying protein function--a call for community action

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Base composition bias might result from competition for metabolic resources.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Rare genomic changes as a tool for phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Genome-scale approaches to resolving incongruence in molecular phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The species concept for prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Past and future species definitions for Bacteria and Archaea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Emendation of the family Chlamydiaceae: proposal of a single genus, Chlamydia, to include all currently recognized species

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Detection and cultivation of soil verrucomicrobia

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The compartmentalized bacteria of the planctomycetes-verrucomicrobia-chlamydiae superphylum have membrane coat-like proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Identification and phylogenetic sorting of bacterial lineages with universally conserved genes and proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental spec

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Radical changes to chlamydial taxonomy are not necessary just yet.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Early Archean (3.3-billion to 3.5-billion-year-old) microfossils from Warrawoona Group, Australia

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Advantages and limitations of genomics in prokaryotic taxonomy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Analysis of singleton ORFans in fully sequenced microbial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Conserved inserts in the Hsp60 (GroEL) and Hsp70 (DnaK) proteins are essential for cellular growth

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Genome phylogeny based on gene content

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Genome trees and the nature of genome evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Ordered orthology as a tool in prokaryotic evolutionary inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Inteins as indicators of gene flow in the halobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Horizontal gene transfer: building the web of life.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Molecules consolidate the placental mammal tree

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The bacterial species dilemma and the genomic-phylogenetic species concept

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The concept of a bacterium

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Deciphering the evolution and metabolism of an anammox bacterium from a community genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Comparative genome analysis of the pathogenic spirochetes Borrelia burgdorferi and Treponema pallidum

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Challenging the anthropocentric emphasis on phenotypic testing in prokaryotic species descriptions: rip it up and start again

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

A call to arms for systematists: revitalising the purpose and practises underpinning the description of novel microbial taxa

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

A call to action for the International Committee on Systematics of Prokaryotes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

21 January 2018

Trees in the web of life

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Evolutionary implications of horizontal gene transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Twenty years of research into Chlamydia-like organisms: a revolution in our understanding of the biology and pathogenicity of members of the phylum Chlamydiae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Making the impossible possible: rooting the tree of placental mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The emb operon, a gene cluster of Mycobacterium tuberculosis involved in resistance to ethambutol.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Phylogenetic analysis of the complete genome sequence of Encephalitozoon cuniculi supports the fungal origin of microsporidia and reveals a high frequency of fast-evolving genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Notes on the characterization of prokaryote strains for taxonomic purposes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Structural analysis of polarizing indels: an emerging consensus on the root of the tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

What It Takes to Be a Pseudomonas aeruginosa? The Core Genome of the Opportunistic Pathogen Updated

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The platypus is in its place: nuclear genes and indels confirm the sister group relation of monotremes and Therians

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Microbial species delineation using whole genome sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Ten years of pan-genome analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The Planctomycetes, Verrucomicrobia, Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Comparison of bacterial diversity along the human intestinal tract by direct cloning and sequencing of 16S rRNA genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Report of the Ad Hoc Committee on Reconciliation of Approaches to Bacterial Systematics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Genome sequences as the type material for taxonomic descriptions of prokaryotes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Prokaryotes: the unseen majority

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

New perspectives on anthropoid origins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

21 January 2018

A rooted net of life.

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Whither microbiology? Phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Default taxonomy: Ernst Mayr's view of the microbial world.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Phylogenetic structure of the prokaryotic domain: The primary kingdoms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Insertion/deletion-based approach for the detection of Escherichia coli O157:H7 in freshwater environments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Phylogenetic relationships within the order Halobacteriales inferred from 16S rRNA gene sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Tracking molecular evolution of photosynthesis by characterization of a major photosynthesis gene cluster from Heliobacillus mobilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The universally conserved GroE (Hsp60) chaperonins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Functional type 2 photosynthetic reaction centers found in the rare bacterial phylum Gemmatimonadetes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

21 January 2018

Lateral gene transfer

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Prokaryotic systematics in the genomics era

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Molecules as documents of evolutionary history

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

Response to Gribaldo and Brochier-Armanet: time for order in microbial systematics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The phylogeny of prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

The Phylum Verrucomicrobia: A Phylogenetically Heterogeneous Bacterial Group

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

A Phylogenetic Definition of the Major Eubacterial Taxa

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/FEMSRE/FUW011

21 January 2018

Identifiers

DOI

10.1093/FEMSRE/FUW011

1 reference

Consolidated OpenCitations Corpus – April 2017

1 reference

Consolidated OpenCitations Corpus – April 2017

PubMed publication ID

27279642

1 reference

Consolidated OpenCitations Corpus – April 2017