Genetic divergence of the rhesus macaque major histocompatibility complex (Q28275284)

1

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Lee Rowen

3

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Brandon Guthrie

4

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Daniel E Geraghty

Comparative sequencing of human and chimpanzee MHC class I regions unveils insertions/deletions as the major path to genomic divergence

5

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language of work or name

English

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publication date

August 2004

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published in

Genome Research

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volume

14

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issue

8

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page(s)

1501-15

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cites work

1 reference

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Complete sequence and gene map of a human major histocompatibility complex. The MHC sequencing consortium

20 March 2017

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Primer3 on the WWW for general users and for biologist programmers

20 March 2017

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Consed: A Graphical Tool for Sequence Finishing

20 March 2017

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Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities

20 March 2017

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Base-Calling of Automated Sequencer Traces UsingPhred. I. Accuracy Assessment

20 March 2017

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The neighbor-joining method: a new method for reconstructing phylogenetic trees

20 March 2017

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Interspersed repeats and other mementos of transposable elements in mammalian genomes

20 March 2017

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Genetics of the immune response: identifying immune variation within the MHC and throughout the genome

7 April 2017

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Data acquisition, data storage, and data presentation in a modern genetics laboratory

29 September 2017

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Characterization of the peptide-binding specificity of Mamu-B*17 and identification of Mamu-B*17-restricted epitopes derived from simian immunodeficiency virus proteins

29 September 2017

1 reference

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Biomedical applications and studies of molecular evolution: a proposal for a primate genomic library resource

29 September 2017

1 reference

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Understanding cytotoxic T-lymphocyte escape during simian immunodeficiency virus infection

29 September 2017

1 reference

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Species-specific evolution of MHC class I genes in the higher primates

29 September 2017

1 reference

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The KIR and CD94/NKG2 families of molecules in the rhesus monkey

29 September 2017

1 reference

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Definition of five new simian immunodeficiency virus cytotoxic T-lymphocyte epitopes and their restricting major histocompatibility complex class I molecules: evidence for an influence on disease progression.

29 September 2017

1 reference

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Mamu-I: a novel primate MHC class I B-related locus with unusually low variability

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

Conserved MHC class I peptide binding motif between humans and rhesus macaques.

29 September 2017

1 reference

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Insight into the primordial MHC from studies in ectothermic vertebrates

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

Virtual reality in the MHC.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

BEAUTY-X: enhanced BLAST searches for DNA queries.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

The complete genomic sequence of 424,015 bp at the centromeric end of the HLA class I region: gene content and polymorphism

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

HLA-E surface expression depends on binding of TAP-dependent peptides derived from certain HLA class I signal sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

HLA-E is a major ligand for the natural killer inhibitory receptor CD94/NKG2A

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

Functional analysis by site-directed mutagenesis of the complex polymorphism in rat transporter associated with antigen processing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

Comparison of DNA sequences with protein sequences.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

Identification of a novel MHC class I gene, Mamu-AG, expressed in the placenta of a primate with an inactivated G locus

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

Absence of functional relevance of human transporter associated with antigen processing polymorphism for peptide selection

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

Natural killer cell receptors specific for MHC class I molecules

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

The MHC class I genes of the rhesus monkey. Different evolutionary histories of MHC class I and II genes in primates.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

Structure of the HLA class I region and expression of its resident genes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

Negative selection of lymphocytes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

29 September 2017

MHC of nonhuman primates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

MHC: orchestrating the immune response

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

MHC diversity and selection

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

Antigen recognition by class I-restricted T lymphocytes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

Origin and function of Mhc polymorphism

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

The HLA class I gene family includes at least six genes and twelve pseudogenes and gene fragments

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

Large-scale sequence comparisons reveal unusually high levels of variation in the HLA-DQB1 locus in the class II region of the human MHC.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

The MHC-E locus is the most well conserved of all known primate class I histocompatibility genes

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

The immune system of ectothermic vertebrates

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

Expansion and contraction of rhesus macaque DRB regions by duplication and deletion

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

Definition of an epitope and MHC class I molecule recognized by gag-specific cytotoxic T lymphocytes in SIVmac-infected rhesus monkeys

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

Examination of four HLA class I pseudogenes. Common events in the evolution of HLA genes and pseudogenes

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

A soluble isoform of the rhesus monkey nonclassical MHC class I molecule Mamu-AG is expressed in the placenta and the testis

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

Diversity of the killer cell Ig-like receptors of rhesus monkeys

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

The BLAST algorithms: practical application in molecular cloning, marker-assisted selection (MAS) and introgression of wheat.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

GESTALT: a workbench for automatic integration and visualization of large-scale genomic sequence analyses.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

Characterization of the rhesus macaque (Macaca mulatta) equivalent of HLA-F.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

The MHC E locus in macaques is polymorphic and is conserved between macaques and humans

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509259

Affinity maturation and hypermutation in a simulation of the humoral immune response

27 November 2018

1 reference

12 December 2020

Residues in TAP2 peptide transporters controlling substrate specificity

1 reference

12 December 2020

Major histocompatibility complex class I molecules of nonhuman primates

1 reference

12 December 2020

Non-human primates: essential partners in biomedical research

1 reference

12 December 2020

The rat cim effect: TAP allele-dependent changes in a class I MHC anchor motif and evidence against C-terminal trimming of peptides in the ER

1 reference

12 December 2020

Small Nonhuman Primates as Potential Models of Human Aging

1 reference

12 December 2020