Eukaryotic genome instability in light of asymmetric DNA replication (Q28272691)

title

Eukaryotic genome instability in light of asymmetric DNA replication (English)

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11 June 2020

author name string

Scott A Lujan

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1

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11 June 2020

Jessica S Williams

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2

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Critical Reviews in Biochemistry and Molecular Biology

11 June 2020

language of work or name

English

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publication date

2016

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published in

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11 June 2020

volume

51

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issue

1

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page(s)

43-52

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Reconsidering DNA Polymerases at the Replication Fork in Eukaryotes

11 June 2020

cites work

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A Major Role of DNA Polymerase δ in Replication of Both the Leading and Lagging DNA Strands

20 March 2017

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Topoisomerase I alone is sufficient to produce short DNA deletions and can also reverse nicks at ribonucleotide sites

20 March 2017

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Replicative DNA polymerase δ but not ε proofreads errors in Cis and in Trans

20 March 2017

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Lagging-strand replication shapes the mutational landscape of the genome

20 March 2017

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20 March 2017

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Genomic instability in cancer

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The major roles of DNA polymerases epsilon and delta at the eukaryotic replication fork are evolutionarily conserved

20 March 2017

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Unlocking the sugar "steric gate" of DNA polymerases

20 March 2017

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The high fidelity and unique error signature of human DNA polymerase epsilon

20 March 2017

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PCNA function in the activation and strand direction of MutLα endonuclease in mismatch repair

20 March 2017

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Division of labor at the eukaryotic replication fork

20 March 2017

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Yeast DNA polymerase epsilon participates in leading-strand DNA replication

20 March 2017

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PCNA, the maestro of the replication fork

20 March 2017

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20 March 2017

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Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid

20 March 2017

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Unique error signature of the four-subunit yeast DNA polymerase epsilon

20 March 2017

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The DNA polymerase domain of pol(epsilon) is required for rapid, efficient, and highly accurate chromosomal DNA replication, telomere length maintenance, and normal cell senescence in Saccharomyces cerevisiae

20 March 2017

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Replication factor C interacts with the C-terminal side of proliferating cell nuclear antigen

20 March 2017

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Pathway correcting DNA replication errors in Saccharomyces cerevisiae

20 March 2017

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Anatomy of a DNA replication fork revealed by reconstitution of SV40 DNA replication in vitro

20 March 2017

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A third essential DNA polymerase in S. cerevisiae

20 March 2017

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Increased and imbalanced dNTP pools symmetrically promote both leading and lagging strand replication infidelity

20 March 2017

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Ribonucleotides are signals for mismatch repair of leading-strand replication errors

20 March 2017

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DNA repair mechanisms and the bypass of DNA damage in Saccharomyces cerevisiae

20 March 2017

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Physiological concentrations of purines and pyrimidines

20 March 2017

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DNA polymerase epsilon links the DNA replication machinery to the S phase checkpoint

7 April 2017

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Ribonucleotides in DNA: Origins, repair and consequences

7 April 2017

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Quantifying the contributions of base selectivity, proofreading and mismatch repair to nuclear DNA replication in Saccharomyces cerevisiae

24 May 2017

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Okazaki fragment maturation involves α-segment error editing by the mammalian FEN1/MutSα functional complex

29 September 2017

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Reconstitution of a eukaryotic replisome reveals suppression mechanisms that define leading/lagging strand operation.

29 September 2017

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Differences in genome-wide repeat sequence instability conferred by proofreading and mismatch repair defects

29 September 2017

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Error-free and mutagenic processing of topoisomerase 1-provoked damage at genomic ribonucleotides

29 September 2017

1 reference

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Evidence that processing of ribonucleotides in DNA by topoisomerase 1 is leading-strand specific.

29 September 2017

1 reference

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Tracking replication enzymology in vivo by genome-wide mapping of ribonucleotide incorporation.

29 September 2017

1 reference

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Ribose-seq: global mapping of ribonucleotides embedded in genomic DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922258

CMG helicase and DNA polymerase ε form a functional 15-subunit holoenzyme for eukaryotic leading-strand DNA replication.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922258

Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922258

How the misincorporation of ribonucleotides into genomic DNA can be both harmful and helpful to cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922258

Mechanism of asymmetric polymerase assembly at the eukaryotic replication fork.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922258

Avoidance of ribonucleotide-induced mutations by RNase H2 and Srs2-Exo1 mechanisms

29 September 2017

1 reference

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A saccharomyces cerevisiae RNase H2 interaction network functions to suppress genome instability

29 September 2017

1 reference

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Human Pol ε-dependent replication errors and the influence of mismatch repair on their correction

29 September 2017

1 reference

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Okazaki fragment metabolism

29 September 2017

1 reference

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Topoisomerase 1-mediated removal of ribonucleotides from nascent leading-strand DNA

29 September 2017

1 reference

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Ribonucleotide incorporation, proofreading and bypass by human DNA polymerase δ

29 September 2017

1 reference

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Exonuclease 1 preferentially repairs mismatches generated by DNA polymerase α

29 September 2017

1 reference

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Mismatch repair balances leading and lagging strand DNA replication fidelity.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922258

Modulation of mutagenesis in eukaryotes by DNA replication fork dynamics and quality of nucleotide pools

29 September 2017

1 reference

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RNase H2-initiated ribonucleotide excision repair.

29 September 2017

1 reference

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Proofreading of ribonucleotides inserted into DNA by yeast DNA polymerase ɛ

29 September 2017

1 reference

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Enzymatic removal of ribonucleotides from DNA is essential for mammalian genome integrity and development.

29 September 2017

1 reference

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Visualization of eukaryotic DNA mismatch repair reveals distinct recognition and repair intermediates.

29 September 2017

1 reference

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Selective bypass of a lagging strand roadblock by the eukaryotic replicative DNA helicase.

29 September 2017

1 reference

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Balancing eukaryotic replication asymmetry with replication fidelity.

29 September 2017

1 reference

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Mutagenic Processing of Ribonucleotides in DNA by Yeast Topoisomerase I

29 September 2017

1 reference

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Mechanisms of mutagenesis in vivo due to imbalanced dNTP pools

29 September 2017

1 reference

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Mutator phenotypes due to DNA replication infidelity.

29 September 2017

1 reference

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Genome-wide model for the normal eukaryotic DNA replication fork.

29 September 2017

1 reference

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Genome instability due to ribonucleotide incorporation into DNA.

29 September 2017

1 reference

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The eukaryotic replicative DNA polymerases take shape

29 September 2017

1 reference

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Evolving views of DNA replication (in)fidelity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922258

High fidelity and lesion bypass capability of human DNA polymerase delta

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922258

A possible mechanism for exonuclease 1-independent eukaryotic mismatch repair

29 September 2017

1 reference

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DNA polymerase epsilon: a polymerase of unusual size (and complexity).

29 September 2017

1 reference

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The eukaryotic leading and lagging strand DNA polymerases are loaded onto primer-ends via separate mechanisms but have comparable processivity in the presence of PCNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922258

Mechanisms in eukaryotic mismatch repair

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922258

Repair of defined single base-pair mismatches in Escherichia coli.

29 September 2017

1 reference

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Palm mutants in DNA polymerases alpha and eta alter DNA replication fidelity and translesion activity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922258

Evidence for Preferential Mismatch Repair of Lagging Strand DNA Replication Errors in Yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922258

Schizosaccharomyces pombe cells lacking the amino-terminal catalytic domains of DNA polymerase epsilon are viable but require the DNA damage checkpoint control

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922258

Genetic factors affecting the impact of DNA polymerase delta proofreading activity on mutation avoidance in yeast.

29 September 2017

1 reference

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Choosing the right sugar: how polymerases select a nucleotide substrate

29 September 2017

1 reference

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A molecular switch in a replication machine defined by an internal competition for protein rings

29 September 2017

1 reference

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Intrinsic coupling of lagging-strand synthesis to chromatin assembly.

29 September 2017

1 reference

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Analysis of the essential functions of the C-terminal protein/protein interaction domain of Saccharomyces cerevisiae pol epsilon and its unexpected ability to support growth in the absence of the DNA polymerase domain

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922258

DNA polymerase epsilon catalytic domains are dispensable for DNA replication, DNA repair, and cell viability

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922258

3'-->5' exonucleases of DNA polymerases epsilon and delta correct base analog induced DNA replication errors on opposite DNA strands in Saccharomyces cerevisiae

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922258

Survival of DNA damage in yeast directly depends on increased dNTP levels allowed by relaxed feedback inhibition of ribonucleotide reductase

2 June 2018

1 reference

https://api.crossref.org/works/10.3109/10409238.2015.1117055

Saccharomyces cerevisiae DNA polymerase delta: high fidelity for base substitutions but lower fidelity for single- and multi-base deletions.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109/10409238.2015.1117055

Ribonucleotides in DNA: hidden in plain sight.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109/10409238.2015.1117055

Evidence from mutational specificity studies that yeast DNA polymerases delta and epsilon replicate different DNA strands at an intracellular replication fork

21 January 2018

1 reference

https://api.crossref.org/works/10.3109/10409238.2015.1117055

The wild-type Schizosaccharomyces pombe mat1 imprint consists of two ribonucleotides

21 January 2018

1 reference

https://api.crossref.org/works/10.3109/10409238.2015.1117055

Strand-specific analysis shows protein binding at replication forks and PCNA unloading from lagging strands when forks stall

21 January 2018

1 reference

https://api.crossref.org/works/10.3109/10409238.2015.1117055

Base selection, proofreading, and mismatch repair during DNA replication in Escherichia coli.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922258

Different base/base mismatches are corrected with different efficiencies by the methyl-directed DNA mismatch-repair system of E. coli

27 November 2018

1 reference

12 December 2020

Mechanism of DNA chain growth. XII. Asymmetry of replication of P2 phage DNA

1 reference

12 December 2020

The 3'-->5' exonucleases of both DNA polymerases delta and epsilon participate in correcting errors of DNA replication in Saccharomyces cerevisiae

1 reference

12 December 2020

Evidence that errors made by DNA polymerase alpha are corrected by DNA polymerase delta

1 reference

12 December 2020

10.3109/10409238.2015.1117055

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26822554 AND SRC:MED&resulttype=core&format=json

11 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26822554 AND SRC:MED&resulttype=core&format=json

11 June 2020

PubMed publication ID

26822554

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26822554 AND SRC:MED&resulttype=core&format=json